Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0499 |
Symbol | |
ID | 5108418 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 536433 |
End bp | 537371 |
Gene Length | 939 bp |
Protein Length | 312 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640501712 |
Product | substrate-binding region of ABC-type glycine betaine transport system |
Protein accession | YP_001186001 |
Protein GI | 146305536 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGGTC TTACCGCGCT GGCCGCATGC TGCACCCTGA GCTTGTTCAG TTCCTCCCTG CTGGCCGCCG AAGATGCCAG TTGTCAGAAG GCCCGTATCG GTCTGGTCGG CTGGACCGAC GTGGTCGCCA CCACTGCCGT GGCCGCAAAC CTGCTCGAAG GCCTGGGGTA TCAAACCACC CAGACCCAGG CCTCGCAGCA GATCATCTTT TCCGGCATTG GCAAGAAGCA GGTCGACTTC TTCCTCGGCT ACTGGAAGCC GCTGATGGAC GACAACATCA AGCCGTTCCA GGACAAGGGA GAGGTCAAGG TGCTCGCCGA GCCGGGCCTG AGCGACGGCA TCTCCAGCCT GGCGGTGCCC ACCTACCTGG CCGAGGCGGG CCTGAGAACC TACGCCGACA TCGCCAAGTT CCGCGACCAG CTGGAAGGCA AGATCTACGG CATCGACCCG GGCACTGGGG CCAACACCAC CATCCAGAAG ATGATCGACA CCAACCAGTT CGGCCTCGGT GGCTTCAAAC TGGTGGAATC CAGCGAGGCG GCCATGCTCG CGGCCGTCAG TCGCGCGGTC AAGGCCAAGA AGCCGGTGGT GTTCTTCGGC TGGAAGCCGC ACCCGATGAA CATCAAGATG GACCTGACCT ACCTCACCGG CAGCGAGGAC GTGTTCGGCG CGGATGAAGG CCTGGCCACG GTCTGGACCG TGGTCGCCCC GGACTACGCC CAGCGCTGCC CCAACGTCGA CCGTCTGCTC AATAACCTGA CCTTCAGCGC CGCTCAGGAA AGCGAGCTGA TGGAGCCGAT CATGGCCCGC GAGGACGCCA AGGCCGTCGC CCGTCGCTGG CTCAAGGAAA ATCCGCAGGA CCTCGACCGC CTGCTGGCCG GGGTGACCAC CTTCGACGGT CAGGACGGCG TGGCGGCAGT ACGGGCCGCC CTCGACTGA
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Protein sequence | MKGLTALAAC CTLSLFSSSL LAAEDASCQK ARIGLVGWTD VVATTAVAAN LLEGLGYQTT QTQASQQIIF SGIGKKQVDF FLGYWKPLMD DNIKPFQDKG EVKVLAEPGL SDGISSLAVP TYLAEAGLRT YADIAKFRDQ LEGKIYGIDP GTGANTTIQK MIDTNQFGLG GFKLVESSEA AMLAAVSRAV KAKKPVVFFG WKPHPMNIKM DLTYLTGSED VFGADEGLAT VWTVVAPDYA QRCPNVDRLL NNLTFSAAQE SELMEPIMAR EDAKAVARRW LKENPQDLDR LLAGVTTFDG QDGVAAVRAA LD
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