Gene Pmen_0499 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0499 
Symbol 
ID5108418 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp536433 
End bp537371 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content64% 
IMG OID640501712 
Productsubstrate-binding region of ABC-type glycine betaine transport system 
Protein accessionYP_001186001 
Protein GI146305536 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components 
TIGRFAM ID[TIGR03414] choline ABC transporter, periplasmic binding protein 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGGTC TTACCGCGCT GGCCGCATGC TGCACCCTGA GCTTGTTCAG TTCCTCCCTG 
CTGGCCGCCG AAGATGCCAG TTGTCAGAAG GCCCGTATCG GTCTGGTCGG CTGGACCGAC
GTGGTCGCCA CCACTGCCGT GGCCGCAAAC CTGCTCGAAG GCCTGGGGTA TCAAACCACC
CAGACCCAGG CCTCGCAGCA GATCATCTTT TCCGGCATTG GCAAGAAGCA GGTCGACTTC
TTCCTCGGCT ACTGGAAGCC GCTGATGGAC GACAACATCA AGCCGTTCCA GGACAAGGGA
GAGGTCAAGG TGCTCGCCGA GCCGGGCCTG AGCGACGGCA TCTCCAGCCT GGCGGTGCCC
ACCTACCTGG CCGAGGCGGG CCTGAGAACC TACGCCGACA TCGCCAAGTT CCGCGACCAG
CTGGAAGGCA AGATCTACGG CATCGACCCG GGCACTGGGG CCAACACCAC CATCCAGAAG
ATGATCGACA CCAACCAGTT CGGCCTCGGT GGCTTCAAAC TGGTGGAATC CAGCGAGGCG
GCCATGCTCG CGGCCGTCAG TCGCGCGGTC AAGGCCAAGA AGCCGGTGGT GTTCTTCGGC
TGGAAGCCGC ACCCGATGAA CATCAAGATG GACCTGACCT ACCTCACCGG CAGCGAGGAC
GTGTTCGGCG CGGATGAAGG CCTGGCCACG GTCTGGACCG TGGTCGCCCC GGACTACGCC
CAGCGCTGCC CCAACGTCGA CCGTCTGCTC AATAACCTGA CCTTCAGCGC CGCTCAGGAA
AGCGAGCTGA TGGAGCCGAT CATGGCCCGC GAGGACGCCA AGGCCGTCGC CCGTCGCTGG
CTCAAGGAAA ATCCGCAGGA CCTCGACCGC CTGCTGGCCG GGGTGACCAC CTTCGACGGT
CAGGACGGCG TGGCGGCAGT ACGGGCCGCC CTCGACTGA
 
Protein sequence
MKGLTALAAC CTLSLFSSSL LAAEDASCQK ARIGLVGWTD VVATTAVAAN LLEGLGYQTT 
QTQASQQIIF SGIGKKQVDF FLGYWKPLMD DNIKPFQDKG EVKVLAEPGL SDGISSLAVP
TYLAEAGLRT YADIAKFRDQ LEGKIYGIDP GTGANTTIQK MIDTNQFGLG GFKLVESSEA
AMLAAVSRAV KAKKPVVFFG WKPHPMNIKM DLTYLTGSED VFGADEGLAT VWTVVAPDYA
QRCPNVDRLL NNLTFSAAQE SELMEPIMAR EDAKAVARRW LKENPQDLDR LLAGVTTFDG
QDGVAAVRAA LD