| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0488 |
|---|
| Symbol | |
|---|
| ID | 5108407 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 523866 |
|---|
| End bp | 524810 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640501701 |
|---|
| Product | substrate-binding region of ABC-type glycine betaine transport system |
|---|
| Protein accession | YP_001185990 |
|---|
| Protein GI | 146305525 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
|---|
| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGAC TTTCTCGTTG GCTGCTCGCT TCTACCCTTG CCTCCTGCGC CACGTTGCAG
GCGGCCGAAT CGGAACGCTG CGAACTGGTA CGCCTGAGCG ACGTCGGCTG GACCGACATC
ACCATGACCA CCACGGTGGC GCGCCTGGTG ATGAGCGAGA TCGGCTACCG CACGCAGGTC
AGACGCCTGA CGTTACCCGA CACCTACCGC GGCCTGTCCG AAGGACACCT GGACGTGTTT
CTCGGCAACT GGATGCCGGC ACAGGCCGAA CTGGTCCAAC CCCTCCTGGA CAGCGGCAGA
ATCGAGAAGC TGAACACCAA CCTGCCGACG GTGCGCTACA CCCTGGCGGT GCTGACGCCG
GGCTACGAGG CCGGGCTGAA GGATTTCGCC GACATCCAGC GTTACAAGAA CGAACTCGGC
GGGCAGATCT TCGGTATCGA ACCGGGCAAC GAAGGCAACG AAATGCTCAA GGGCATGATC
CGCGACAACA CCTTCGGTCT GGGGGGCTTC AGCCTGGTGG AGACCAGTGA GAGCGGCATG
CTCAATCACG TCGAACGCGC CCAGCGGCTG GGCAAGTGGG CCGTGTTCCT GGGCTGGGAA
CCGCATCCGA TGAACGAGCG TCTGAAGATG AACTATCTGT CCGGCGGTGA CGATTATTTC
GGCCCCAACT ATGGCGCGGC ACAGGTCAAC ACAGTGGCGC GGGGCAACTT CAGCCAGCAA
TGCCCCAACC TGGCCCGGCT GTTTCGCAAC ATGACCTTCA CCATCACGGC GGAGAACCAG
CTGATGAGCG CCGTGCTGGA GGGCAATACC AACCGCCGCC GCGTGGCCAA GCGCTGGATC
GAAGACAACC CGCAGATGAT CGCGGCCTGG CTCAAGGGCG TGACCCGCTA CCAGGGCGGC
CCCATCGACA GAGCCTTCGA CATGCCGCTG GCAGCGAACA ACTGA
|
|---|
| Protein sequence | MNGLSRWLLA STLASCATLQ AAESERCELV RLSDVGWTDI TMTTTVARLV MSEIGYRTQV
RRLTLPDTYR GLSEGHLDVF LGNWMPAQAE LVQPLLDSGR IEKLNTNLPT VRYTLAVLTP
GYEAGLKDFA DIQRYKNELG GQIFGIEPGN EGNEMLKGMI RDNTFGLGGF SLVETSESGM
LNHVERAQRL GKWAVFLGWE PHPMNERLKM NYLSGGDDYF GPNYGAAQVN TVARGNFSQQ
CPNLARLFRN MTFTITAENQ LMSAVLEGNT NRRRVAKRWI EDNPQMIAAW LKGVTRYQGG
PIDRAFDMPL AANN
|
|---|
| |