Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0485 |
Symbol | |
ID | 5108404 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 519847 |
End bp | 520791 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640501698 |
Product | substrate-binding region of ABC-type glycine betaine transport system |
Protein accession | YP_001185987 |
Protein GI | 146305522 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACGA TCAAGACCAC CGCCGCCTTC GGTCTGCTGG CCTGCCTGCT GATGCAGGGC GCCATGGCCG CCGAGCCGGC CAGCTGCAAG CAGGTGCGCT TCGCCGAAAT CGGCTGGGCC GATATCGCCG CCACCACCGG CGTGGCCATG ACCCTGGTCG AAGGCCTGGG TTATCAGCCG CGCAAGATCA TGGCCTCGGT TCCCATCGCC TTCACCGGGG TGAAGAACGG CCAGGTCGAT GCCTTCCTCG GCTACTGGGC GCCCTCGATG GACGCGGTGA TCGAGCCGTT CCTCAAGGAC GGCGGCGTCA AGGTCCTGGA GAAGCCCAAT CTCGAAGGCG CCAAGTACAC CCTGGCAGTG CCCACCTATG CCGCCGAGGC CGGCCTGAAG AGCTTTCAGG ACATCGCCAA GTTCAAGGAT CAGCTGGGCG GCAAGATCTA CGGCATCGAG CCCGGCAATG ACGGCAACCT GCTGATCGAA GGCATGATCA AGAGCGATCA GTTCGGCCTC GGCAGCTTCC GCATGATCGA GTCCAGCGAA GCCGGCATGC TGGTGCAGGT ATCGCGCGCC ATCAAGAAGA AGGAGCCGGT GGTGTTCCTC GGCTGGGCGC CGCACCCGAT GAACACCCAG CACGACATCA CCTACCTGTC CGGTGGCGAC GACGTGTTCG GCCCCGACTA TGGCGCAGCC AAGGTCTACA CCGTGGTGCC GCCGGATTAC GAAGCGCGCT GCGCCAACGT CGGCAAGCTG CTGAACAACC TGCAGTTCAC CGTCGAGATC GAAAGCCAGC TGATGGAAAA GGTGCTGGAG AAGGAAAACC CGCAGAACGT CGCCAAGGAG TGGATCAAGG CCAACCCGGC GATCCTCGAC CAGTGGCTGA GCGGCGTGAC CACCTTCGAC GGACAGGACG GCGTCGCCGC CGTGAAGAAA CACGTCGGGC TGTAA
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Protein sequence | MKTIKTTAAF GLLACLLMQG AMAAEPASCK QVRFAEIGWA DIAATTGVAM TLVEGLGYQP RKIMASVPIA FTGVKNGQVD AFLGYWAPSM DAVIEPFLKD GGVKVLEKPN LEGAKYTLAV PTYAAEAGLK SFQDIAKFKD QLGGKIYGIE PGNDGNLLIE GMIKSDQFGL GSFRMIESSE AGMLVQVSRA IKKKEPVVFL GWAPHPMNTQ HDITYLSGGD DVFGPDYGAA KVYTVVPPDY EARCANVGKL LNNLQFTVEI ESQLMEKVLE KENPQNVAKE WIKANPAILD QWLSGVTTFD GQDGVAAVKK HVGL
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