| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0480 |
|---|
| Symbol | |
|---|
| ID | 5108399 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 512878 |
|---|
| End bp | 514344 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640501693 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001185982 |
|---|
| Protein GI | 146305517 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGAGC GGCCACAGCC GCCACTCACT GCCGGACGCC TCATGCAATC CACAGTCAGC
CAACTCGACC CACGCACCGC CCGCCTGCTG CCCTGGATAG TCGCCATCGC CTTCTTCATG
CAGACGCTGG ACGGCACCAT CCTCAACACC GCCCTGCCGA GCATGGCCGC CGACCTGGCC
GAAGACCCGC TGCGCATGCA GTCGGTGGTG ATCGCCTACA TGCTCACCGT GGCCCTGCTG
ATTCCCGCCT CGGGCTGGAT CGCCGACCGC TTCGGCACGC GGCGCATCTT CTTCGGCGCC
ATCGCCCTGT TCAGCCTGGG CTCGCTGCTG TGCGCCCTGT CCATCTCCCT GCCGATGCTG
GTAGGCGCAC GCATCGTGCA GGGGCTTGGC GGCGCGCTGA TGATGCCGGT CGGGCGTCTG
GTGGTGCTGC GCGCCTACCC GCGCTCGGAG CTGGTGCGGA TCATGAGCTT CATCACCCTG
CCCGGCCTGC TCGGCCCGCT GATCGGCCCG AGCCTGGGTG GCTGGCTGGT GGTGGTCGCC
AGCTGGCACT GGATCTTCCT GATCAATCTG CCGGTGGGCC TGCTCGGCTG CTGGGCAGCG
CTACGGCATA TGCCGGATCT GCGCGGGCCG AGCCGCAGCC GCTTCGATAC GCCGGGTTTT
CTCCTGTTCG GCGCCGCCAT GCTGCTGATC ACCGTGGCCC TGGAAGGCCT GGGCGAGCTG
CACCTGCCGA CCATGCGCGT CACCCTTCTG CTGCTCGGCG GCCTGGCCTG CCTGGCCGCC
TACTGGCTGC GCGCCGCGCG CATCGAGCAA CCGCTGTTCG CGCCCAGGCT GTTTCACACC
CGCAGTTTCG CCGTGGGCAT CATCGGCAAT CTGTTCGCGC GCCTGGGTAG CGGCGCCCTG
CCCTTTCTCA CGCCCCTGCT GCTGCAGCTG GCTCTGGGCT ACTCACCGGC GCAGGCCGGC
ATGAGCCTGA TTCCCCTGGC GCTGGCCGCC ATGGCGGTCA AGCCGCTGGC CAAGCCGCTG
ATCGATCGCC TCGGCTACCG GCGCATACTC ACCAGCAATA CCCTGCTGCT CGGCGCGCTG
ATCGCCAGCC TGGCGCTGGT CGACGGGCAG ACCTCGACGC TGCAGCTGAT CGTCCAGCTG
AGCCTGATCG GCGCCTGCAA CTCGCTGCAG TTCACCGCGA TGAACACCGT GACCCTGATC
GATCTGGACA ACCGCGACGC CAGCAGCGGC AACGGCCTGC TGTCGGTGGT GGTGCAACTG
GCCATGGGCC TGGGCGTCGC CTCGGCAGCC GCGCTGCTCG GCGGTTTCAG CCGCGAGTTC
AGCGGCGACG AGCAGATTCT CCGGGCGTTC CAGGCCACCT ATCTGTGCGT CGGCTTGCTG
TCGATGCTGG CAGCGGCGAT CTTCCTCCAG CTCGACCCGG CCGACGGCCG CCGCGCCAGG
CCGCTCGACG TACCACCGGA AGACTAG
|
|---|
| Protein sequence | MAERPQPPLT AGRLMQSTVS QLDPRTARLL PWIVAIAFFM QTLDGTILNT ALPSMAADLA
EDPLRMQSVV IAYMLTVALL IPASGWIADR FGTRRIFFGA IALFSLGSLL CALSISLPML
VGARIVQGLG GALMMPVGRL VVLRAYPRSE LVRIMSFITL PGLLGPLIGP SLGGWLVVVA
SWHWIFLINL PVGLLGCWAA LRHMPDLRGP SRSRFDTPGF LLFGAAMLLI TVALEGLGEL
HLPTMRVTLL LLGGLACLAA YWLRAARIEQ PLFAPRLFHT RSFAVGIIGN LFARLGSGAL
PFLTPLLLQL ALGYSPAQAG MSLIPLALAA MAVKPLAKPL IDRLGYRRIL TSNTLLLGAL
IASLALVDGQ TSTLQLIVQL SLIGACNSLQ FTAMNTVTLI DLDNRDASSG NGLLSVVVQL
AMGLGVASAA ALLGGFSREF SGDEQILRAF QATYLCVGLL SMLAAAIFLQ LDPADGRRAR
PLDVPPED
|
|---|
| |