| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0471 |
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| Symbol | |
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| ID | 5108390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 501656 |
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| End bp | 503101 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640501684 |
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| Product | nodulation efficiency protein NfeD |
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| Protein accession | YP_001185973 |
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| Protein GI | 146305508 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1030] Membrane-bound serine protease (ClpP class) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAGAA AGGGACCGCC GCCACGGGTT CGGTATCAAT GCGGTTCTCG GGAGTCGAAC
GTGTTGCCTG GCTGGTTGCG TCTGTGTCTG TGTGCCCTGA TCCTCTGCGC ATCGGTAGGG
GTGAGTGCGG CGCCGGGGGC GGTGGTGCAG TTGCAGGTGG ACGGCGTGAT CGGCCCGGCC
AGCGCCGACT ACCTGGTGCG CGGCCTGGCC AAGGCGGTGG ACGAGGGCGC GCAGCTGGTG
GTGATCGAGA TCGACACCCC CGGCGGGCTG GATACCGCCA TGCGTGCCAT CATCAAGGCG
ATTCTCGCCA GCCCCATCCC GGTGGCCAGC TACGTCGCGC CCGGCGGTGC GCGGGCGGCC
AGCGCCGGCA CCTACATCCT CTATGCCAGT CATGTCGCGG CCATGACGCC GGGCACCAAC
CTCGGCGCCG CCACACCGGT GGCCATCGGC ATGCCGGGAG CGCCGAGCCA GCCCGAGGGG
GATGACAAGG GCGAGAAGGA CAAGGCCACG CAAGGCGACA AGGGGACGGG CGATGCCATG
ACCGCCAAGC AGGTCAACGA CGCCGCCGCC TATATCCGCG GCCTGGCCAA CATGCGCGGG
CGCAATGCCG AGTGGGCCGA GCAGGCGGTG CGCGAGGCCG TCAGCCTGTC CGCCGAGGAG
GCGCTGGAGC AGAAGGTGAT CGACTACCTG GCCAGGGACA CGGCCGATCT GCTGCGCCAG
CTCGACGGCA AGACCCTGCA GGCCGCGGGC GTCGAGCTGA CCCTGGCCAC CGCCGGCGCG
CCGCTGATCA GCCACGCGCC GGACTGGCGC ACCCGGCTGC TGGCCGTGAT CACCAACCCC
AGCGTGGCGC TGATCCTGAT GATGATCGGC GTCTACGGCC TGTTCTTCGA ATTCTCCAAT
CCCGGCAGCG GCGTCGGTGG CGTGCTCGGC GGCATCAGCC TGGTACTCGC CCTCTATGCC
CTGCAACTGC TGCCGGTGAA CTACGCCGGG GTGGCGCTGA TCCTGCTCGG CATCGCCTTC
ATCACCGCCG AGGCCTTCCT GCCCAGCTTC GGCGTGCTCG GCATCGGCGG GGTGGTGGCC
TTCGTCTTCG GTGGGCTGAT CCTGATCGAC ACCGACGTGC CGGGTTTCGG CATCCCGCTG
GCGCTGATCA TCACCCTGGC GCTGGTCAGC GCCGCGCTGA TCCTGGCCAT CGTCGGCATG
GCGCTCAGGG CCAGGCGACG TCAGCAGGTG GCCGGTGACA GCGGTCTGGT CGGCAGCCTG
GTGGCCATCG CCGCGGTGCG TGAGGACGAT CCACGCGCCG GCTGGGTGGC ACTGCAGGGC
GAACGCTGGC AGGTGCAGGG CGCTGCGCCG CTGCAGCCCG GGCAGCAGGT ACGAGTCACC
GCGCGCGAGG GCGTGCATCT ACAGGTCAGC GCGGTGGATG AGCCGCCGCC CCGAGGAGGT
AACTGA
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| Protein sequence | MLRKGPPPRV RYQCGSRESN VLPGWLRLCL CALILCASVG VSAAPGAVVQ LQVDGVIGPA
SADYLVRGLA KAVDEGAQLV VIEIDTPGGL DTAMRAIIKA ILASPIPVAS YVAPGGARAA
SAGTYILYAS HVAAMTPGTN LGAATPVAIG MPGAPSQPEG DDKGEKDKAT QGDKGTGDAM
TAKQVNDAAA YIRGLANMRG RNAEWAEQAV REAVSLSAEE ALEQKVIDYL ARDTADLLRQ
LDGKTLQAAG VELTLATAGA PLISHAPDWR TRLLAVITNP SVALILMMIG VYGLFFEFSN
PGSGVGGVLG GISLVLALYA LQLLPVNYAG VALILLGIAF ITAEAFLPSF GVLGIGGVVA
FVFGGLILID TDVPGFGIPL ALIITLALVS AALILAIVGM ALRARRRQQV AGDSGLVGSL
VAIAAVREDD PRAGWVALQG ERWQVQGAAP LQPGQQVRVT AREGVHLQVS AVDEPPPRGG
N
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