| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0453 |
|---|
| Symbol | ligB |
|---|
| ID | 5108372 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 480654 |
|---|
| End bp | 482342 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640501666 |
|---|
| Product | NAD-dependent DNA ligase LigB |
|---|
| Protein accession | YP_001185955 |
|---|
| Protein GI | 146305490 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGCCA TGAAGCGCTG GATCGCTCCG CTCCTCCTGC CCCTCATCGC CCAGGCCGAA
CCCTGCCCCG ACTGGCCGGA CAGCCGCGCC CAGGTGGAAT TCGCGGCGCT CAGCCAACAG
ATCGCGCAGT GGGATGACGC CTACCACAAC CAGGGCCGCT CGCCGATAGC CGACGAGCTC
TACGACCAGG CCCGCGAGCG CCTGCAGCGC TGGCAGCAAT GTTTCGCGCC TGCACGACAG
CCCCTGCCGG AACCCCTCAC AGGCAGCGCA GGGCCAATCG CCCATCCCGT CCCGCAAACC
GGTCTGCGCA AGCTCAACGA CGCGGCGATC GGCGAATGGA TCGGCAGCCG CGACGACCTG
TGGATCCAGC CCAAGGTCGA TGGCGTGGCC GTCACCCTGG TCTATCGGCA AGGCCGCCTG
CACCAGGCCA TCAGTCGTGG CGACGGCCGC CACGGCCAGG ACTGGAGCGC ACGCGCCCGA
CAGTTGCCTG CTGTCCCGAC GCGGCTGCCC GAGGCGCTCG ACCTGGTGCT GCAGGGCGAG
CTGTACTGGC GCCTCGAGGA TCACCTGCAG GCGCGCGATG GCGGCGCCGG AGCGCGCGGC
AAGGTGGCCG GAATGATGGC CAGGCACGAG CTGAGCGACA CGGACGGCGC CGCCATCGGC
CTGTTCGTGT GGGACTGGCC GGACGGCCCG GCGAGCATGG ACGAACGCCT GAGCCAGCTG
CAGGCGCTGG GTTTCGCCGA CAGCCAGCAC TACAGCAAGC CGATCCGCAG CGTCGAAGAA
GCCAGGCAAT GGCGTCAGCA TTGGTATCGC CATCGCCTGC CCTTCGCCAG CGATGGCGTG
GTGCTGCGCC AGGGCACGCG CCCCGCCGGC GCGCGCTGGC AGGCGGAGGC CCCGCACTGG
GCGGTGGCCT GGAAGTACCC GGCCAGTCAG GCGCTGGCGG TGGTGCAGGC CGTGGACTTT
CGCATCGGCC GCAGTGGGCG CATCACGCCG GTGCTACGCC TGCAGCCGGT CGATCTCGAC
GACAGGCGCA TCAGCCGCGT GGCCCTCGGC TCGGTCCCGA CCTGGAAGAG CCTCGACGTC
CGCCCCGGCG ACCAGGTGGC GATCCGCCTG GCCGGCCTGA CCATCCCACG TCTGGACAGC
GTGATCTGGC GCAGCCCGCA CCGGGCGCCG GTCGAGGTAC CGCGCAGCGC GGACTACCAT
GCCCTCAGCT GCTGGCGCAG CAGCCCGTCC TGCCAGCATC AGTTCCAGGC CCGTCTGGCC
TGGCTGAGCA GCAAGCAGGG GCTGGCGCTG AGCGGGGTGG GCCCGGGCAC CTGGAGCAGT
CTGCCCTTGC AGGGGCTGCT CGACTGGCTG GAGCTGGACA AAGCCCAGCT GCAGAGCCTG
CCCGGCATCG GCCCGCGCCG CGCTGCACAG CTGCAGCAGG CCTTCGCTCA GGCCAGGGAC
CGACCGCTGC AGCAATGGCT GCGTGCCCTC GGCGCACCTC CGGGTTTCGA CGCCGGCGGG
CTCGACGACT GGCCCAGCCT GATCGAGCGC CAGCGAGACG ACTGGCTGCG TCGCCCCGGC
GTCGGCCCCA AGGGTGCCGA TCGCCTGCTG GCGTTCTTCA GCCACCCCGA AGTTCAGCGC
CTGGGCAGGC AACTGCAGCA GGCCGGTGTC GCCGGTTTCC AGCCCCAAGC AGGCCCGCCA
CGCAGCTGA
|
|---|
| Protein sequence | MLAMKRWIAP LLLPLIAQAE PCPDWPDSRA QVEFAALSQQ IAQWDDAYHN QGRSPIADEL
YDQARERLQR WQQCFAPARQ PLPEPLTGSA GPIAHPVPQT GLRKLNDAAI GEWIGSRDDL
WIQPKVDGVA VTLVYRQGRL HQAISRGDGR HGQDWSARAR QLPAVPTRLP EALDLVLQGE
LYWRLEDHLQ ARDGGAGARG KVAGMMARHE LSDTDGAAIG LFVWDWPDGP ASMDERLSQL
QALGFADSQH YSKPIRSVEE ARQWRQHWYR HRLPFASDGV VLRQGTRPAG ARWQAEAPHW
AVAWKYPASQ ALAVVQAVDF RIGRSGRITP VLRLQPVDLD DRRISRVALG SVPTWKSLDV
RPGDQVAIRL AGLTIPRLDS VIWRSPHRAP VEVPRSADYH ALSCWRSSPS CQHQFQARLA
WLSSKQGLAL SGVGPGTWSS LPLQGLLDWL ELDKAQLQSL PGIGPRRAAQ LQQAFAQARD
RPLQQWLRAL GAPPGFDAGG LDDWPSLIER QRDDWLRRPG VGPKGADRLL AFFSHPEVQR
LGRQLQQAGV AGFQPQAGPP RS
|
|---|
| |