Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0416 |
Symbol | |
ID | 5108338 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 439138 |
End bp | 440532 |
Gene Length | 1395 bp |
Protein Length | 464 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640501632 |
Product | citrate transporter |
Protein accession | YP_001185921 |
Protein GI | 146305456 |
COG category | [E] Amino acid transport and metabolism [G] Carbohydrate transport and metabolism |
COG ID | [COG2610] H+/gluconate symporter and related permeases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.00414278 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGGCC TACTCGGAAT TGCGCTCTCG CTGGCGCTGC TCATCTATCT CGCCTACCGC GGCATCAACG TGCTCATCCT CGCCCCTTTG CTGGCCCTGC TCGCCGTCAT CTGCAGCGGC GAAGGCGACC GCCTGCTGGG CACCTACACC CAGGTGTTCA TGCACAGCCT GGGCGGCTAC ATCATCAAGT ACTTCCCGCT GTTCATGCTC GGCGCCATCT TCGGCAAGCT GATGGATGAC TCGGGCTCCG CCAGGACCAT CGCCTACTGG CTGATCCGCC AGCTCGGCAG CCAGCGCGCG GTGCTTGCCA TCGGCCTGGC GTGCGGCCTG CTGACCTACG GCGGTGTCTC GCTGTTCGTC GTCGGTTTCG CCGTATTCCC AATCGCGGCA GCGCTGTTTC GCGAGGCCCA GGTGCCCAAG CGCCTGATCC CCGGCGCAAT CGCCCTCGGC TCGCTGAGTT TCACCATGAC CGCCCTGCCC GGCACCCCGG CGATCCAGAA CGCCATTCCG ATGCCGTTCT TCGGCACCGA CGCCTTCGCC GCCCCCATCC TCGGCCTGAT CGGCGCGCTG ATCATGTTCA TTGGCGGCAT CTCCTGGCTG GAGTACCGCA CGCGCCAGGC CCGCCGCGCT GGCGAGGGTT ACGGCGACCA CGACGAGCAT GACGACGCGA CGTCCGGCGA GAAAACCGGC ATGCCGTCGC TGACCGTCGC GCTGGTGCCA ATCCTGCTGG TGATCGTGGC CAACTTCGTA CTCAGCAAGT ACCTGCTGCC GCAGCTGGAC AGCAGCTACC TGGCCGAACC CAAGTACGGT TCCACCGAGC TAAGCGCAGT GATCGGGCTG TGGTCGATCA TCACCGCACT GGTAATGGCC TGCGTCGTGC TCGTGCTGCT CAACTGGAAC AAGTGGGTCG ACCTGAAAAG CACCATCAAC AAAGGCACCC TCGGTTCGCT GCTGCCGATC TTCAATACCG CCTCGGAAGT CGGCTACGGC TCGGTCATCG CCTCGCTGGC GGCCTTCGTC GTGCTGCGCG AATTCATGGT CGGCCTGTCC CCGGACAACA TCCTCATTTC CGAAGCCATC GTCGTCAACG TACTGGCCGG CATCACCGGT TCCGCCTCCG GCGGCCTGAG CATCGCGCTC AACACCATGG GCGACACCTA CCTGCAACTC GCCCAGGCGG CCGGTATTTC CCCGGAACTG CTGCACCGCG TCGCCAGCAT GGCTTCCGGT GGCCTCGACA CCCTGCCGCA CAACGGCGCC GTGGTCACCC TGCTGGCCAT CTGCGGCCTG ACTCACCGCA GCTCCTATGC GGACATTTTC ATGGTCACCA TTCCACCGAC CATCGCCGGC CTGGCCGTGG TGATCACGCT CGGTACGCTG TTCGGCTCCT TCTGA
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Protein sequence | MAGLLGIALS LALLIYLAYR GINVLILAPL LALLAVICSG EGDRLLGTYT QVFMHSLGGY IIKYFPLFML GAIFGKLMDD SGSARTIAYW LIRQLGSQRA VLAIGLACGL LTYGGVSLFV VGFAVFPIAA ALFREAQVPK RLIPGAIALG SLSFTMTALP GTPAIQNAIP MPFFGTDAFA APILGLIGAL IMFIGGISWL EYRTRQARRA GEGYGDHDEH DDATSGEKTG MPSLTVALVP ILLVIVANFV LSKYLLPQLD SSYLAEPKYG STELSAVIGL WSIITALVMA CVVLVLLNWN KWVDLKSTIN KGTLGSLLPI FNTASEVGYG SVIASLAAFV VLREFMVGLS PDNILISEAI VVNVLAGITG SASGGLSIAL NTMGDTYLQL AQAAGISPEL LHRVASMASG GLDTLPHNGA VVTLLAICGL THRSSYADIF MVTIPPTIAG LAVVITLGTL FGSF
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