| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0389 |
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| Symbol | |
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| ID | 5108311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 404057 |
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| End bp | 406891 |
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| Gene Length | 2835 bp |
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| Protein Length | 944 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640501605 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_001185894 |
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| Protein GI | 146305429 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCTGT ATCGTGAACT CGACTATGGC ACCCCTGCTC GCAGCGGTGC TCCGGTAACC
CTGGAAATCG ACGGCAACGC CATCACCGTG CCGGCCGGCA CCTCGCTGAT GCGCGCGGCC
CAGGAGGCCG GCATCGCCGT GCCCAAGCTG TGCGCCAGCG ACAGCCTGGA GCCGTTCGGC
TCGTGCCGCC TGTGCATGGT GGAAATCGAA GGCCGCCGCG GCTTCCCCGC CTCCTGCACC
ACGCCGGTGG AGCCGGGCAT GGTGGTGCGC ACGCAGAGCC CGAAACTGGC CGAACTGCGT
CGCGGCACCA TGGAGCTGTA TATCTCCGAC CACCCGCTGG ACTGCCTGAC CTGCTCGGCC
AACGGCAACT GCGAGCTGCA GGACATGGCC GGTGTGGTCG GCCTGCGCGA GGTGCGCTAC
GACCCGGTGA AGACGCACCT GGCCGAGGCC AAGGACGAGT CCAACCCCTA TTTCAGCTAC
GACCCGTCCA AGTGCATCGT CTGCAACCGC TGCGTGCGCG CCTGCGAGGA AGTGCAGGGC
ACCTTCGCCC TGACCATCGA CGGCCGCGGC TTCGATTCGC GCGTAGCCGC CGGCCAGGCC
GAGGATTTCC TCGACTCCGA GTGCGTGTCC TGCGGTGCCT GCGTCAACGC CTGCCCGACT
GCCACGCTGA TGGAAAAGTC GGTGATCGAG CTGGGCCAGG CCGAGCGCAG CGTCGCCACC
ACCTGCGCCT ACTGCGGCGT TGGCTGCTCG TTCAACGCCG AGGTCAAGGG CAACACCGTG
GTGCGCATGG TGCCGAACAA GAACGGCCAC GCCAACCACG GCCACGCCTG CGTCAAGGGC
CGCTTCGCCT GGGGCTACGC GACCCACCCG GACCGCATCA AGACCCCGAT GATCCGCGAC
AGCATCCATG AGCCGTGGCG CTCGGTGAGC TGGGACGAGG CCATCGGCTA CGCCGCCCGG
CGCTTCAAGG AAATCCAGGC ACAGTATGGC CGCAATGCGG TCGGCGGGCT GACCTCCTCG
CGCTGCACCA ACGAGGAAAC CTACCTGGTG CAGAAGCTGG TGCGCGCCGC CTTCGGCAAC
AACAACGTCG ATACCTGCGC ACGTGTCTGC CACTCGCCGA CCGGCTACGG CCTCAAGGTG
ACCCTCGGTG AATCGGCCGG TACCCAGGAT TTCGACTCGG TGCTGTCCGC CGACGTGGTG
CTGGTGATCG GTGCCAACCC CACCGACGGC CACCCGGTGT TCGGCTCGCA GCTCAAGCGC
CGCCTGCGCG AGGGCGCCAA GCTGATCGTC GCCGACCCGC GCGGCATCGA CCTGGTGCGC
AGCCCGCACA TCCGCGCCGA GCATCACCTG CAGCTGCGTC CGGGCAGCAA CGTCGCCCTG
CTCAACAGCC TGGGCCATGT GATCGCCACC GAGGGCCTGA TCAACGAGGC CTTCGTCGCC
GAGCGCTGCG AGGCCGAAGC CTTCGAGCAA TGGCGCACCT TCGTCAGCGA ACAGCGCAAC
AGCCCCGAGG CCATGGAAGT CCTGACCGGC GTACCGGCCG CTTCGGTGCG CGCTGCCGCG
CGCCTGTACG CTACCGGTGG CAACGCGGCG ATCTACTACG GCCTGGGCGT CACCGAGCAC
AGCCAGGGCT CGTCCACCGT GATGGCGATC GCCAACCTGG CCATGGCCAC CGGCAATATC
GGCCGTCCGG GTGTCGGCGT GAACCCGCTG CGCGGACAGA ACAACGTGCA GGGCTCCTGC
GACATGGGCT CCTTCCCCCA CGAGCTGCCG GGCTACCGCC ACGTTTCCGA TCCGGTGGCG
CGGCCGCAGT TCGAGGCCGC CTGGGGCGTC AAGCTGCTCG ACGAGCCGGG CCTGCGCATC
CCCAACATGC TCGCCGCGGC GCATGCCGGC ACCTTCAAGG GCATGTACAT CCAGGGCGAG
GACCCGGCGC AGTCCGACCC CGACACCCAG CACGTCACCG ATGCGCTCAA GGCCATGGAG
TGCGTGGTGG TGCAGGACCT GTTCCTCAAC GAAACCGCCA AGTACGCCCA CGTGTTCCTG
CCTGGCGCCT CCTTCCTGGA GAAGAACGGC ACCTTCACCA ATGCCGAGCG GCGCATCTCG
CCGGTGCGCA AGGTGATGCC GGCGCTGGCC GGCAAGGAAG ACTGGGAAGT GACCGTGGCG
TTGTCCAACG CCCTCGGCTA CCCGATGAAC TACAAGCATC CGTCCGAGAT CATGGACGAG
ATCGCCGCGC TGACGCCGAC CTTCACTGGT GTCAGCTACG CCAAGCTCGA CCGCCTGGGC
AGCATCCAGT GGCCGTGCAA CGACGAGGCG CCGGAAGGCA CGCCGATCAT GCACGAGGAC
GCCTTCGTAC GTGGCAAGGG GCGCTTCGTG GTCACCGAGT TCATCCCCAC CGAGGAGCGC
ACCTCGCGCA AGCGGCCGCT GGTGCTGACC ACCGGGCGCA TCCTTTCGCA GTACAACGTC
GGCGCGCAGA CCCGGCGCAC CGCCAACAAG GCCTGGCACG CCGAGGACAT CCTCGAGCTG
CACCCGGTGG ACGCCGAGGA TCGCGGCATC AAGGACGGCG ACTGGGTCGG CATCAACAGC
CGTGCCGGCG AGACGGTGAT GCGCGCCAAG GTCACCGAGC GCATGCAGCC GGGCGTGGTG
TACACCACCT TCCACCACCC GGAATCCGGC GCCAACGTGA TCACCACGGA CAACTCCGAC
TGGGCCACCA ACTGCCCGGA GTACAAGGTC ACCGCGGTGC AGGTGTGCAA GGTCGAAGTC
CCGTCGCAGT GGCAGCAGGA GTTCGACACC TTCACCCGCG AGCAGGTCAG CCTGCTGCCG
GTGGTGCAGC TATGA
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| Protein sequence | MALYRELDYG TPARSGAPVT LEIDGNAITV PAGTSLMRAA QEAGIAVPKL CASDSLEPFG
SCRLCMVEIE GRRGFPASCT TPVEPGMVVR TQSPKLAELR RGTMELYISD HPLDCLTCSA
NGNCELQDMA GVVGLREVRY DPVKTHLAEA KDESNPYFSY DPSKCIVCNR CVRACEEVQG
TFALTIDGRG FDSRVAAGQA EDFLDSECVS CGACVNACPT ATLMEKSVIE LGQAERSVAT
TCAYCGVGCS FNAEVKGNTV VRMVPNKNGH ANHGHACVKG RFAWGYATHP DRIKTPMIRD
SIHEPWRSVS WDEAIGYAAR RFKEIQAQYG RNAVGGLTSS RCTNEETYLV QKLVRAAFGN
NNVDTCARVC HSPTGYGLKV TLGESAGTQD FDSVLSADVV LVIGANPTDG HPVFGSQLKR
RLREGAKLIV ADPRGIDLVR SPHIRAEHHL QLRPGSNVAL LNSLGHVIAT EGLINEAFVA
ERCEAEAFEQ WRTFVSEQRN SPEAMEVLTG VPAASVRAAA RLYATGGNAA IYYGLGVTEH
SQGSSTVMAI ANLAMATGNI GRPGVGVNPL RGQNNVQGSC DMGSFPHELP GYRHVSDPVA
RPQFEAAWGV KLLDEPGLRI PNMLAAAHAG TFKGMYIQGE DPAQSDPDTQ HVTDALKAME
CVVVQDLFLN ETAKYAHVFL PGASFLEKNG TFTNAERRIS PVRKVMPALA GKEDWEVTVA
LSNALGYPMN YKHPSEIMDE IAALTPTFTG VSYAKLDRLG SIQWPCNDEA PEGTPIMHED
AFVRGKGRFV VTEFIPTEER TSRKRPLVLT TGRILSQYNV GAQTRRTANK AWHAEDILEL
HPVDAEDRGI KDGDWVGINS RAGETVMRAK VTERMQPGVV YTTFHHPESG ANVITTDNSD
WATNCPEYKV TAVQVCKVEV PSQWQQEFDT FTREQVSLLP VVQL
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