| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0317 |
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| Symbol | |
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| ID | 5110287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 326208 |
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| End bp | 327272 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640501534 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001185823 |
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| Protein GI | 146305358 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGC CACGTCACCT ACCCTATCTG CTTGCCGCCG GGCTCGCCGT GCTGGCCGCG
CTCGCCTGGT GGCAGCTACG CCCCGACGGG CTGGGCGAAG GGTTCGCCAG CGGTAACGGG
CGCATCGAAG CCACCGAAGT GGATGTGGCG ACCAAGCTGG CCGGGCGCAT CGCCAGCATC
GAGGTCGATG AGGGCGATTT CGTCGAGCCA GGCCAGATTC TCGCGCGCAT GGACACCCAG
GCGCTCGAAG CCCAGCTGGC CCAGGCCCGC GCCCAGCTGC GCCAGGCCGA GAACGGCCAG
AACACCGCGG CCAGCCAGAT CCGCCTGCGC GAGAGCGAGA AGCTCAGCGC CGAGGCCATG
GTGCGCCAGC GCCAGGCGGA GCTGGATGCC GCGCGCAAAC GTCACGCGCG CAGCGCCACC
CTGGTGCAGC GCAACGCCAT GGCCCAGCAG CAGCTGGACG ACGACCTGGC CCGCCTGCAG
AGCGCCGAGG CCGCACTGGC AGCCGCACGC GCCCAGGTCA GCTCGGCCGA GGCCGGCATC
GCCGCTGCCC AGTCGCAGGC CATCGAGGCG CAATCGGCCA CCGAGGCGGC CCGCGCCAGC
GTCGAACGGC TGCAGGTGGA CATCGACGAC GGCCTGCTCA GGGCGCCACG CGCCGGCCGC
GTGCAGTACC GCGTGACCCA GCCGGGCGAG GTGCTCGGCG CCGGCGGCAA GCTGCTCAAT
CTGGTGGACC TCACCGACGT CTACATGACC TTCTTCCTGC CCGAGCGCCA GGCCGGCCGC
GTCGCTCTCG GCAGCGAGGT GCGCCTGGTG ATCGACGCCG CGCCGCAGTA CGTGATCCCG
GCCAGGGTCA GCTATGTCGC CAGCGTCGCC CAGTTCACGC CGAAGACCGT GGAGACCGCC
AACGAGCGCG AGAAGCTGAT GTTCCGGGTC AAGGCACGCA TCGACCCCGA GCTGTTGAGC
AGGCACCTGC AGCAGGTCAA GACCGGCGTG CCTGGCATGG CCTATCTGCG CCTCGATCCT
GACGCCGAGT GGCCCGCGCA TCTGGCGATC AAGGTTCCGC AATGA
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| Protein sequence | MKKPRHLPYL LAAGLAVLAA LAWWQLRPDG LGEGFASGNG RIEATEVDVA TKLAGRIASI
EVDEGDFVEP GQILARMDTQ ALEAQLAQAR AQLRQAENGQ NTAASQIRLR ESEKLSAEAM
VRQRQAELDA ARKRHARSAT LVQRNAMAQQ QLDDDLARLQ SAEAALAAAR AQVSSAEAGI
AAAQSQAIEA QSATEAARAS VERLQVDIDD GLLRAPRAGR VQYRVTQPGE VLGAGGKLLN
LVDLTDVYMT FFLPERQAGR VALGSEVRLV IDAAPQYVIP ARVSYVASVA QFTPKTVETA
NEREKLMFRV KARIDPELLS RHLQQVKTGV PGMAYLRLDP DAEWPAHLAI KVPQ
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