Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0280 |
Symbol | hemC |
ID | 5110250 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 288636 |
End bp | 289574 |
Gene Length | 939 bp |
Protein Length | 312 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640501497 |
Product | porphobilinogen deaminase |
Protein accession | YP_001185786 |
Protein GI | 146305321 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0181] Porphobilinogen deaminase |
TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCGCG AAATCCGCAT CGCCACCCGT AAGAGCGCCC TGGCCCTGTG GCAGGCCGAA TATGTCAAAG CCCGCCTCGA ACAGGCCCAC CCCGGTCTGC TGGTGAGTCT GGTGCCCATG GTCAGCCGCG GCGACAAGCT GCTCGATGCG CCGCTGGCGA AGATCGGCGG CAAGGGCCTG TTCGTCAAGG AACTGGAAAC CGCGCTGCTG GAGAACGAGG CCGACATCGC CGTGCATTCG ATGAAGGACG TGCCGATGGA CTTCCCCGAA GGCCTGGGCC TGTACTGCAT CTGCGAGCGC GAGGACCCGC GCGACGCCTT CGTTTCCAAC ACCTATGACA GCCTCGACGC CTTGCCGGCC GGCAGCGTGG TGGGCACCTC CAGCCTGCGT CGCCAGGCCC AGCTGCTGGC CCGCCGGCCC GATCTGAAAA TCCAGTTCCT GCGCGGCAAC GTCAACACCC GCCTGGCCAA GCTCGATGCC GGCGAGTACG ACGCCATCAT CCTTGCCGCC GCCGGCCTGA TCCGCCTCGG CTTCCAGGAC CGTATCCGCA GCTCGATCAG CGCCGAGGAC AGCCTGCCGG CCGGTGGCCA GGGTGCCGTC GGCATCGAGT GCCGAAGCGC CGACGCCGAG ATCCATGCGC TGCTGGCGCC GCTGCATCAC CGCGAAACCG CGCTGCGGGT GACCGCCGAG CGCGCATTGA ACAAGCGCCT CAATGGCGGC TGCCAGGTGC CCATCGCCTG CTACGCGCTG CTGGAGAACG ACCAACTGTG GCTGCGCGGC CTGGTCGGCC AGCCTGACGG CGGCCTGTTG CTGCGCGCAG AACACCGCGC CGCCAGCAGC GACGCCGAAG CCCTGGGGGT GCGGGTGGCC GAGGCGCTGC TGGCGCAGGG CGCCGAGGCC ATCCTCAAGG CCGTTTATGG CGAGGCCGGC CACCCGTGA
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Protein sequence | MPREIRIATR KSALALWQAE YVKARLEQAH PGLLVSLVPM VSRGDKLLDA PLAKIGGKGL FVKELETALL ENEADIAVHS MKDVPMDFPE GLGLYCICER EDPRDAFVSN TYDSLDALPA GSVVGTSSLR RQAQLLARRP DLKIQFLRGN VNTRLAKLDA GEYDAIILAA AGLIRLGFQD RIRSSISAED SLPAGGQGAV GIECRSADAE IHALLAPLHH RETALRVTAE RALNKRLNGG CQVPIACYAL LENDQLWLRG LVGQPDGGLL LRAEHRAASS DAEALGVRVA EALLAQGAEA ILKAVYGEAG HP
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