| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0267 |
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| Symbol | |
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| ID | 5106234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 276381 |
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| End bp | 277628 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640501484 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001185773 |
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| Protein GI | 146305308 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGCCT TTACCTACCG CGACGGTGAG CTGTTCGCGG AAGGTGTCGC CTTGTCCGCG
CTGGCCCAGC GCTTCGGCAC ACCCACCTAC GTCTACTCGC GCGCCCATAT CGAGGCGCAG
TACCGCGCCT ATGCCGATGC CCTGGCGGGC ATGCCGCATC TGGTCTGCTT CGCGGTCAAG
GCCAACTCCA ACCTTGGCGT GCTGAACGTC CTGGCCCGCC TCGGCGCCGG CTTCGACATC
GTCTCCAGCG GTGAGCTGGA ACGCGTGCTG GCCGCCGGTG GCGAGCCTAG CCGCATCGTC
TTCTCCGGCG TCGGCAAAAG CCGCGACGAC ATGCGCCGCG CCCTCGAAGT GGGCGTGCAC
TGCTTCAACG TCGAGTCCAG CGTCGAGCTG GAGCGCCTGC AGAAGGTCGC CGCCGAACTG
GGTCTGAAGG CGCCGGTGTC GCTGCGGGTC AACCCGGACG TGGACGCCGG CACCCATCCG
TACATTTCCA CCGGTCTCAA GGAAAACAAG TTCGGCATCG ACATCGAGCA GGCCGAGGCG
GTCTACGCCC GCGCCGCCGA GCTGCCGAAC CTGGAGGTGG TCGGCGTCGA CTGCCATATC
GGCTCGCAGC TGACCACCCT CGAACCCTTC CTCGATGCCC TGGACCGCCT GCTGCTGCTG
GTCGACCGGC TGGCCGCCCG CGGCATCCAC ATCAAGCACC TGGACCTGGG CGGCGGCCTC
GGCGTGCAGT ATCGCGACGA ACAGCCACCG CTGGCCGGCG ATTACATCGC CGCCGTGCGC
AAACGCCTGG CAGGCCGCGA TCTGGCCCTG GTGTTCGAAC CGGGCCGCTT CATCGTGGCC
AATGCCGGCG TGCTGCTGAC CCAGGTGGAA TACCTCAAGC ACACCGAGCA CAAGGACTTC
GCCATCATCG ATGCGGCGAT GAACGACCTG ATCCGCCCGG CGCTGTACCA GGCCTGGATG
GACGTTTCGC CGGTGCAGCC GCGTGACGGC GAGGCGCGCC ACTACGACCT GGTCGGGCCG
ATCTGCGAGA CCGGCGACTT CCTGGCCAAG GACCGCCAGC TGGTGCTGGA AGAAGGCGAC
CTGCTGGCCG TGCGTTCGGC CGGCGCCTAC GGTTTCGTCA TGAGCTCCAA CTACAACACC
CGCGGCCGCG CCGCCGAGGT GCTGGTGGAC GGCGAACAGG CTTATGAAGT GCGTCGCCGC
GAGACCGTCC AAGAGCTCTA CGCCGGCGAA AGCCTGCTGC CGGCCTGA
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| Protein sequence | MEAFTYRDGE LFAEGVALSA LAQRFGTPTY VYSRAHIEAQ YRAYADALAG MPHLVCFAVK
ANSNLGVLNV LARLGAGFDI VSSGELERVL AAGGEPSRIV FSGVGKSRDD MRRALEVGVH
CFNVESSVEL ERLQKVAAEL GLKAPVSLRV NPDVDAGTHP YISTGLKENK FGIDIEQAEA
VYARAAELPN LEVVGVDCHI GSQLTTLEPF LDALDRLLLL VDRLAARGIH IKHLDLGGGL
GVQYRDEQPP LAGDYIAAVR KRLAGRDLAL VFEPGRFIVA NAGVLLTQVE YLKHTEHKDF
AIIDAAMNDL IRPALYQAWM DVSPVQPRDG EARHYDLVGP ICETGDFLAK DRQLVLEEGD
LLAVRSAGAY GFVMSSNYNT RGRAAEVLVD GEQAYEVRRR ETVQELYAGE SLLPA
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