| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0231 |
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| Symbol | gabD |
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| ID | 5106935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 237746 |
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| End bp | 239197 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640501448 |
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| Product | succinate-semialdehyde dehydrogenase I |
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| Protein accession | YP_001185737 |
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| Protein GI | 146305272 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 69 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACTGA AAGACCCCCA GCTGCTGCGC CAACAGGCCT ATATCCATGG CCAGTGGCTG
GACGCCGACA GCGGTCAGAC CATCGCCGTG AACAACCCGG CCACCGGTGA GATCATCGGT
CATGTGCCGA AGATGGGCCG TGCGGAGACG CGCCGTGCCA TCGAGGCCGC CGAGAAGGCG
CTGCCGGCCT GGCGTGCGCT GACTGCCAAG GAGCGCGCCA ACAAGCTGCG CCGCTGGTTC
GAGTTGCTGA TGGAGAACCA GGATGACCTC GGTCGCCTGA TGACCCTGGA GCAGGGCAAG
CCGCTGGCCG AAGCCAAGGG CGAGATCGCC TATGCCGCCT CCTTTATCGA GTGGTTCGCC
GAAGAAGCCA AGCGCGTCTA CGGTGACGTG ATTCCCGGCC ACCAGCCGGA CAAGCGCCTG
ATCGTGATCA AGCAGCCGAT CGGCGTCACC GCCGCCATTA CCCCGTGGAA CTTCCCCGCT
GCGATGATCA CCCGCAAGGC CGGCCCGGCA CTGGCCGCCG GTTGCACCAT GGTGATCAAG
CCGGCTTCGC AGACCCCGTT CTCCGCCCTG GCCCTGGTCG AGCTGGCCGA GCGCGCCGGC
ATCCCGAAAG GTGTGCTGAG CGTGGTCACC GGCAGCGCCG GCGAAGTCGG TGGCGAGCTG
ACCAGCAACC CCATCGTGCG CAAGCTGTCC TTCACCGGCT CGACCGAGAT CGGTCGTCAG
CTGATGGCCG AATGCGCCCA GGACATCAAG AAGGTGTCGC TGGAGCTGGG CGGCAACGCG
CCGTTCATCG TCTTTGATGA CGCCGATCTG GATGCCGCAG TCGAAGGCGC GCTGATCTCC
AAGTACCGCA ACAACGGCCA GACCTGCGTC TGCGCCAACC GTATCTACGT GCAGGACGGC
GTCTACGATG CCTTCGCCGA GAAGCTGATC GCCGCTGTAT CCAAGCTGAA GATCGGCAAC
GGTCTGGAGG ACGGCACCAC CACCGGCCCG CTGATCGACG AGAAGGCCGT GGCCAAGGTG
CAGGAGCACA TCGCCGACGC GGTGAACAAG GGCGCCAAAC TGGCCCTGGG CGGCAAGCCG
CATGCCCTGG GTGGCACCTT CTTCGAACCG ACCATTCTGG TGGACGTGCC GAAAACCGCT
GCCGTGGCCA AGGAAGAGAC CTTCGGCCCG CTGGCGCCGC TGTTCCGCTT CAAGGACGAG
GCCGAGGTGA TCGCCATGGC CAACGATACC GAGTTCGGCC TGGCTTCCTA CTTCTATGCC
CGCGACCTGG GCCGCGTGTT CCGCGTGGCC GAGGCGCTGG AGTACGGCAT GGTGGGCATC
AACACCGGCC TGATCTCCAA CGAAGTCGCG CCGTTCGGCG GCGTGAAGGC TTCCGGCCTG
GGCCGCGAAG GCTCCAAGTA CGGGATCGAG GACTACCTCG AGATCAAGTA CATGTGCCTG
GGCGGCATCT GA
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| Protein sequence | MQLKDPQLLR QQAYIHGQWL DADSGQTIAV NNPATGEIIG HVPKMGRAET RRAIEAAEKA
LPAWRALTAK ERANKLRRWF ELLMENQDDL GRLMTLEQGK PLAEAKGEIA YAASFIEWFA
EEAKRVYGDV IPGHQPDKRL IVIKQPIGVT AAITPWNFPA AMITRKAGPA LAAGCTMVIK
PASQTPFSAL ALVELAERAG IPKGVLSVVT GSAGEVGGEL TSNPIVRKLS FTGSTEIGRQ
LMAECAQDIK KVSLELGGNA PFIVFDDADL DAAVEGALIS KYRNNGQTCV CANRIYVQDG
VYDAFAEKLI AAVSKLKIGN GLEDGTTTGP LIDEKAVAKV QEHIADAVNK GAKLALGGKP
HALGGTFFEP TILVDVPKTA AVAKEETFGP LAPLFRFKDE AEVIAMANDT EFGLASYFYA
RDLGRVFRVA EALEYGMVGI NTGLISNEVA PFGGVKASGL GREGSKYGIE DYLEIKYMCL
GGI
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