| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0169 |
|---|
| Symbol | |
|---|
| ID | 5106849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 168101 |
|---|
| End bp | 171607 |
|---|
| Gene Length | 3507 bp |
|---|
| Protein Length | 1168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640501385 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001185675 |
|---|
| Protein GI | 146305210 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTCC CAGTGTCGAA CGAGTCCGCA ATGGACGAAA AGAGCTTTCG CCGCATTCTC
AACCGTAACG TCGGCCTGCC GCTTGGTCTG GGCCTGGTCA GCGCCCTGTT CTTCGCGGTG
CTGATCGGCT ACCTGCTCAA CGTGATCCGC TGGGTCGAGC ACACCGATCA GGTGCTCAAC
CGGGCCAGCG AGGTGTACAA GCTGACGCTC GACCTGGAGA CCGGCATGCG CGGCTTCCTG
CTCAGCGGCC GCGAGGACTA TCTGGCGCCT TACGAGCTGG CCCGCGGCAA GTACCGCCCA
TTGGTCGAGC AGATGATCAC CATGGTCAAG GACAATCCGC CCCAGGCGCA GCGCCTCGAG
CGTCTGCTGG CCATGCAGGC GCAGTGGGAT GCCTTCGCCC AGGAGGTGAT CGCCAGCCGT
CGCAACGGCC GCGATATTCT CGAAGAGGTG GGCAGCGGCC GCGGCAAGAA CCTCACCGAT
GGCATGCGTG GAGAGCTGGA TGCCTTCATC AGCAGCGAGC GCGACCTGCG CCGGCACCGC
AATGCCCAGG TCAGCAGCGC CACCACCTGG GGCGCCGGCA TCTATCTGGT GGTCAGCATC
CTGTTCAGCG CCCTGCTGGC TCTGTTCGGC CGGCGCGAGC TGCTGAACCT TTCGCACACC
TATTCCGCGG CGCTGGGCAA GCAGGCCGAA TACGCCGAGG AGCAGCATCA GCGGGCCTGG
CTGCGCGGCG GGCAGACGCA ACTGTCGGAG CGCCTGCTGG GCCAGCCGCA GGTCAACGAG
CTGGCCGAGC GCTCGCTGGC ATTCCTCGCC GAATACCTCG ACTGCGTGGT CGCCGCGCTG
TACCAGCGCG ATGCCCGCAG CGGCGACCTG CGGCGTATCG CAGGCTATGG TTTCAGCGAG
GGCGAGGCTC TCAGGGACGA GTTCTACCGC GGCGAGGGCC TGGTCGGGCA GGCCGCCCAG
CGGCGCCGCC TGGTGTGTCT GGACAACCTG CCCGCAGACT ACATCAAGGT CACCTCGGGC
CTGGGCGATG GCCAGCCCGT GAGTGTCGCC CTGGTGCCGC TGCAGTCGGA GGATCGCGTC
AACGGCGTGC TCGAACTGGC ATTCATGCGC GTGCTCGAGC CTCGCGAGCG CGAGTTTCTC
GAATCCATTT CCGCCAGCGT CGGCACTGCG CTGGAAGCAT CGCTCTATCG CCAGCGCCTG
CAGGAGGTGC TGGCCGACAC CCAGCAGCTC AACGAGGAGC TGCAGACCCA GCAGGAAGAA
CTGCGCGCCG CCAACGAGGA GCTGGAGCAG CAGGCCCGCG TGCTCAAGGA GTCCCAGGCC
CACCTGGAGA CCCAGCAGGC CGAGCTGGAA CAGACCAACG AGAAGCTCTC CGAGCAGGCG
CAGACGCTGG CCGACCAGCG CGACGAGCTG GACCAGCGCA ACACCGCCCT TGGTCGCATC
CAGGCGCAAC TGGAAGAGCG CGCCGAGGAG CTGCAGCGCG CCAGCCGCTA CAAGTCCGAG
TTCCTCGCCA ACATGAGTCA CGAGCTGCGC ACGCCGCTGA ACAGCTCGCT GATCCTGGCC
AAGCTGCTGG CGGAAAACGC CCGGGGCAAC CTCGACGAGG AGCAGGTCAA GTTCGCCGAG
TCCATCTACT CGGCCGGTAA CGACCTGCTC AACCTGATCA ACGACATTCT CGACATCGCC
AAGGTCGAGG CGGGCAAGCT CGAGGTGCGC CCCGAGCGCA CGCCGCTGGC CGGCATGCTC
GAGAGCCTGA GCGACGTGTT CGAGCCGCTG GCACGCGAGC GCGGCCTGAG CTTCGAAATC
GAGCGCCAGG CAGAGCTGCC GCAGACGCTA TTCACCGATC GCCAGCGTGC CGAGCAGATC
CTGCGCAATC TGCTGTCCAA CGCCTTCAAG TTCACCGACC GCGGTGGCGT GACCCTGCGC
GTGTCGCGCC ACGACGAGCA GACCCTGGCG TTTGCCGTGA GCGACAGCGG TATCGGCATC
GCCCCGGATC AGCAGGCGGT GATCTTCGAG GCCTTCCGCC AGGCCGACGG CACCACCAAC
CGCCGTTACG GCGGTACCGG CCTGGGGCTG TCCATCTCGC GCGATCTGGC CGGCCTGCTC
GGCGGCTCCA TCGGCGTCAG CAGCGTGCCC GGCGAGGGCA GCACCTTCAC CCTGCTGCTG
CCTGAGCGGC TGCTGGACCA CGGCGCGCCT GCCCGGCCGC TGCCCGCTGC CCCGGTTTCG
CCGCCGGCAG TGGTCGCTTC CGTCCCGGCG GCGCCGCTGC CTGCCGCACC GCGCGCGCCA
GCGCCCTTCG CCGACGACCG CGAGCGCCTG GGTGAACGCG GCGGCCGCCG CGTGCTGGTG
GTGGAGGACG AGGTGCGCTT CGCCCGCATC CTCTTCGATC TGGCTCACGA ACTGGGTTAC
GCCTGCCTGG TGGCCACCAG TGCCGACGAG GGGCTGGAGC TGGCTCGTCA GTACCGTCCG
GACGCCATTC TGCTGGACAT GCGCCTGCCC GACGATTCCG GGCTCGGCGT GCTGCAGCGC
CTGAAGGACG ATGCGCAGAC CCGTCACATC CCGGTTCATG TGGTCTCGGT GGAGGACCAC
AGCGAGGCGG CCCTGCACCT GGGCGCCGTG GGCTATGCGC TCAAACCCAC CAGCCGCGAC
CAGCTCAAGG AGGTGTTCGG CAAGCTGGAG GCCAAGCTCA ATCAGCAGGT CAAGCGCGTG
TTGCTGGTCG AGGACGACCC GCTGCAGCGC AACAGCATCG CCCGTCTGAT CGGCGACGAG
GACATCGAGA TCAGCGCTGT GGCCCTGGCC GGCGAAGCGC TGGAGAAGCT GCGCGACACG
GTGTTCGACT GCATGATCAT CGACCTCAAG TTGCCCGACA TGCTCGGCAA CGAGCTGCTG
CGGCGCATGG CCGAGGAGGA CATCTGCTCC TTCCCGCCGG TGATCGTCTA CACCGGGCGC
AACCTCACCC GCGAAGAAGA GGCCGAGCTG CTGCGCTATT CGCGCTCGAT CATCATCAAG
GGCGCGCGCT CGCCGGAGCG TCTGCTGGAC GAAGTCACCC TGTTCCTGCA CAAGGTCGAG
TCGTCGCTGT CCAGCGAGCA TCAGCGCATG CTCAAGACCG CGCGCAGCCG GGAAAAACTG
TTCGAAGGGC GCCGCCTGCT GCTGGTGGAT GACGACGTAC GCAACATCTT CGCCCTGTCC
AGTGCGCTGG AACAGAAGGG GGCGGCGGTG GAGGTGGCCC GCAACGGTTT CGAGGCGCTG
GCCAAACTGG ACGAGCACGA CGACATCGAT CTGGTGCTGA TGGACGTGAT GATGCCGGAG
ATGGACGGTT ATGAGGCCAC CCGCAAGATT CGCCAGCAGC CGCGCTGGAA CAACCTGCCG
ATCATCGCGG TGACGGCCAA GGCGATGAAG GACGACCAGG AGCGCTGCCG CGAGTCCGGC
GCCAACGACT ACCTGGCCAA GCCCATCGAC CTGGATCGCC TGTTCTCCCT GATCCGCGTG
TGGATGCCCA AGCTGGAGCG CCTCTGA
|
|---|
| Protein sequence | MDVPVSNESA MDEKSFRRIL NRNVGLPLGL GLVSALFFAV LIGYLLNVIR WVEHTDQVLN
RASEVYKLTL DLETGMRGFL LSGREDYLAP YELARGKYRP LVEQMITMVK DNPPQAQRLE
RLLAMQAQWD AFAQEVIASR RNGRDILEEV GSGRGKNLTD GMRGELDAFI SSERDLRRHR
NAQVSSATTW GAGIYLVVSI LFSALLALFG RRELLNLSHT YSAALGKQAE YAEEQHQRAW
LRGGQTQLSE RLLGQPQVNE LAERSLAFLA EYLDCVVAAL YQRDARSGDL RRIAGYGFSE
GEALRDEFYR GEGLVGQAAQ RRRLVCLDNL PADYIKVTSG LGDGQPVSVA LVPLQSEDRV
NGVLELAFMR VLEPREREFL ESISASVGTA LEASLYRQRL QEVLADTQQL NEELQTQQEE
LRAANEELEQ QARVLKESQA HLETQQAELE QTNEKLSEQA QTLADQRDEL DQRNTALGRI
QAQLEERAEE LQRASRYKSE FLANMSHELR TPLNSSLILA KLLAENARGN LDEEQVKFAE
SIYSAGNDLL NLINDILDIA KVEAGKLEVR PERTPLAGML ESLSDVFEPL ARERGLSFEI
ERQAELPQTL FTDRQRAEQI LRNLLSNAFK FTDRGGVTLR VSRHDEQTLA FAVSDSGIGI
APDQQAVIFE AFRQADGTTN RRYGGTGLGL SISRDLAGLL GGSIGVSSVP GEGSTFTLLL
PERLLDHGAP ARPLPAAPVS PPAVVASVPA APLPAAPRAP APFADDRERL GERGGRRVLV
VEDEVRFARI LFDLAHELGY ACLVATSADE GLELARQYRP DAILLDMRLP DDSGLGVLQR
LKDDAQTRHI PVHVVSVEDH SEAALHLGAV GYALKPTSRD QLKEVFGKLE AKLNQQVKRV
LLVEDDPLQR NSIARLIGDE DIEISAVALA GEALEKLRDT VFDCMIIDLK LPDMLGNELL
RRMAEEDICS FPPVIVYTGR NLTREEEAEL LRYSRSIIIK GARSPERLLD EVTLFLHKVE
SSLSSEHQRM LKTARSREKL FEGRRLLLVD DDVRNIFALS SALEQKGAAV EVARNGFEAL
AKLDEHDDID LVLMDVMMPE MDGYEATRKI RQQPRWNNLP IIAVTAKAMK DDQERCRESG
ANDYLAKPID LDRLFSLIRV WMPKLERL
|
|---|
| |