| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0154 |
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| Symbol | |
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| ID | 5106834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 152534 |
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| End bp | 155329 |
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| Gene Length | 2796 bp |
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| Protein Length | 931 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640501370 |
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| Product | DNA polymerase I |
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| Protein accession | YP_001185660 |
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| Protein GI | 146305195 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAAG CTCCCCTCGT TCTGGTCGAC GGTTCCTCGT ATCTGTACCG CGCCTTCCAC
GCCCTGCCGC CGCTGACCAC CTCCAAGGGC ATGCCTACCG GTGCGGTGAA GGGCGTGCTG
AACATGCTCA AGAGCCTGCG CAAGCAGTAC CCCGACAGCC CCTTCGCCGT GGTCTTCGAT
GCCAAGGGCG GTACCTTCCG CGACGAGCTG TTCGCCGAGT ACAAGGCCAA CCGCCCGTCC
ATGCCGGACG AGTTGCGCGT GCAGGTCGAG CCGCTGCACG CCAGCGTGCG CGCCCTGGGC
CTGCCGCTGC TGTGCGTGGA GGGGGTCGAG GCCGACGACG TGATCGGCAC CCTGGCCCGC
CAGGCCGCGG CGCAGCAGCG CGACGTGGTG ATCTCCACCG GCGACAAGGA CATGGCGCAG
CTGGTCTGCC CGCACGTTAC GCTGGTCAAC ACCATGACCG GAAGTGTCTA TGACGAAGGT
GGCGTGAAAG AGAAATTCGG TGTCGGTCCC GAGCTGATCA TCGACTACCT GGCGCTGATG
GGCGACAAGG TCGACAACAT CCCCGGCGTG CCCGGCGTTG GCGAAAAGAC CGCGCTGGGC
CTGCTGGTCG GCGTCGGCGG TGGCCTCGAC GTGCTCTACG CCAACCTCGA CAAGGTGCCC
GAGCTGCCGA TCCGCGGCGC CAAGAGCCTG CCGGCCAAGC TCGAGGAACA CCGCGAGATG
GCCTATCTCT CCTACCAGCT GGCCACCATC AAGACCGATG TGCCGCTGAA CATCGAGATC
GATTCGCTGC ACCCGGGCGA GCCGGATCAG GCGACCCTGG TGCAGCTGTA CGGCGAGCTC
GAATTCAAGG CCTGGCTCGA CGAGCTGTTG CGGCAGAACA AGGCCCTGGC TGCCAAGGCC
GCCGTGCCGG CCGGCGACCT GTTCGCCGAG CCCGCGGGGC CTGCTGCCGA GGAAACGGCC
GAGACGCCGC CGATGGGCGC GGGCGACTAC GAGCTGGTGC TGGAGCAGGC ACAGTTCGAC
GCCTGGCTGA AGAAACTGCA GCAGGCCGAG CTGATCGCCT TCGACAGCGA AACCACCAGT
ATCGACGCGC AGCAGGCGCA GCTGGTCGGT CTGTCCTTCG CGGTCAAGGC CGGCGAGGCT
GCCTACGTGC CGCTGGCGCA CAGCTATATG GGCGTGCCGC AGCAGCTCGA TCGCGATGCC
GTGCTCAAGG CGCTCAAACC GATCCTCGAA GACCCGGCCA AGGCCAAGGT CGGCCAGCAC
GCCAAGTACG ACATCAATGT CCTGGCCAAT GCCAGTACCC CGATCGCCGT GCAGGGCGTG
GCCTTCGATA CCATGCTCGA ATCCTACGTG CTGGATTCGA CCGCCACGCG CCACGACATG
GACAGCCTGG CCCTGAAGTA CCTGGGCCAC AGCACCATCC GCTTCGAGGA CATCGCCGGT
CGGGGCGCCA AGCAGCTGAC CTTCGACCAG ATCGCCCTGG AGCAGGCCGG CCCTTACGCC
GCCGAGGACG CCGACGTGAC CCTGCGTCTG CACCAGGAGT TGTGGGGCAG GCTTGAGGCC
GTGCCGTCAC TGGCCAAGGT GCTGCGCGAG ATCGAAATTC CGCTGGTGCC GGTGCTCGCG
CGCATCGAGC GCAACGGCGC GCTGGTCGAT GCCAAACTGC TCGGCGAGCA GAGCGTCGAG
CTGGGCGAAA AACTGGTGGA ACTGGAGCGC AAGGCCTTCG AGATCGCCGG CGAGGAATTC
AACCTGGCCT CGCCCAAGCA GCTGGGCGTG ATCCTCTATG AAAAACTCGG CTACCCGGTG
ATCAGCAAGA CCGCCAAGGG CCAGCCCTCC ACTGCCGAGG CAGTACTCGC CGAGCTGGCC
GAGCAGGACT TCGAGCTGCC CAAGGTGCTG ATGCAGTACC GCTCCCTGAG CAAGCTCAAG
AGCACCTACA CCGACAAGCT GCCGGAACAG ATCAACCCGC GCACCGGGCG TATCCACACC
AGCTACCACC AGGCGGTGGC GGCGACCGGC CGACTGTCGT CGAGCGATCC GAACCTGCAG
AACATCCCGA TCCGCACCGC CGAGGGCAGG CGCATCCGCC AGGCCTTCGT CGCGCCCAAG
GGCTACAAGA TGATGGCGGC GGACTACTCG CAGATCGAGC TGCGCATCAT GGCCCACCTG
GCCAAGGACG AAGGCCTGCT CGACGCCTTC CGCCATGATC TGGACGTGCA CAAGGCCACT
GCCGCCGAAG TGTTCGGCGT GGCGCTGGAG GAGGTGACCA GTGACCAGCG GCGCAAGGCC
AAGGCCATCA ACTTCGGCCT GATCTACGGC ATGAGCGCCT TCGGCCTGGC CAAGCAGATC
GACGTCGAGC GCAAGGAGGC GCAGGCCTAT ATCGACCGCT ACTTCGCCCG CTATCCCGGT
GTGCTGAGCT ACATGGAGCG CACCCGCGCG CAGGCTGCCG AGCAGGGCTA TGTGGAGACC
GTGTTCGGTC GCCGCCTGTA CCTGCCGGAG ATCCACGCGC AGAACCAGGC CATGCGCAAG
GGCGCCGAGC GCGCGGCGAT CAACGCGCCG ATGCAGGGCA CCGCGGCGGA CATCATCAAG
CGCGCGATGA TCGCTGTGGA TGACTGGCTG CAAGGCAGCG GCATCGACGC CCGCATCATT
CTCCAGGTGC ACGACGAACT GGTTCTTGAA GTGCGCGAGG ATCTGCTCGA AGAGGTCGGC
GCCCAGCTCA AGGCGCTGAT GGGTGGGGCC GCGCAGCTGG ATGTGCCCCT GCTGGTGGAA
GTCGGCGTAG GCGCCAACTG GGACGAAGCG CATTGA
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| Protein sequence | MSQAPLVLVD GSSYLYRAFH ALPPLTTSKG MPTGAVKGVL NMLKSLRKQY PDSPFAVVFD
AKGGTFRDEL FAEYKANRPS MPDELRVQVE PLHASVRALG LPLLCVEGVE ADDVIGTLAR
QAAAQQRDVV ISTGDKDMAQ LVCPHVTLVN TMTGSVYDEG GVKEKFGVGP ELIIDYLALM
GDKVDNIPGV PGVGEKTALG LLVGVGGGLD VLYANLDKVP ELPIRGAKSL PAKLEEHREM
AYLSYQLATI KTDVPLNIEI DSLHPGEPDQ ATLVQLYGEL EFKAWLDELL RQNKALAAKA
AVPAGDLFAE PAGPAAEETA ETPPMGAGDY ELVLEQAQFD AWLKKLQQAE LIAFDSETTS
IDAQQAQLVG LSFAVKAGEA AYVPLAHSYM GVPQQLDRDA VLKALKPILE DPAKAKVGQH
AKYDINVLAN ASTPIAVQGV AFDTMLESYV LDSTATRHDM DSLALKYLGH STIRFEDIAG
RGAKQLTFDQ IALEQAGPYA AEDADVTLRL HQELWGRLEA VPSLAKVLRE IEIPLVPVLA
RIERNGALVD AKLLGEQSVE LGEKLVELER KAFEIAGEEF NLASPKQLGV ILYEKLGYPV
ISKTAKGQPS TAEAVLAELA EQDFELPKVL MQYRSLSKLK STYTDKLPEQ INPRTGRIHT
SYHQAVAATG RLSSSDPNLQ NIPIRTAEGR RIRQAFVAPK GYKMMAADYS QIELRIMAHL
AKDEGLLDAF RHDLDVHKAT AAEVFGVALE EVTSDQRRKA KAINFGLIYG MSAFGLAKQI
DVERKEAQAY IDRYFARYPG VLSYMERTRA QAAEQGYVET VFGRRLYLPE IHAQNQAMRK
GAERAAINAP MQGTAADIIK RAMIAVDDWL QGSGIDARII LQVHDELVLE VREDLLEEVG
AQLKALMGGA AQLDVPLLVE VGVGANWDEA H
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