| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0122 |
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| Symbol | |
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| ID | 5106307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 121557 |
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| End bp | 122549 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640501338 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001185628 |
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| Protein GI | 146305163 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.28926 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCATG CCCCGCTGAC CACCCTGCAC GTGGTTTCCC TGATCCTGCA ACGTTTCGCC
GACCAGCCCG AACTGCAGCC GCAACTGTTG GCCGGCAGCG GCATCGGTGC GGCCGAGCTG
GAGTGCCCCG ATGCTCGCAT CACCCGGGTG CAGGAGCTGC AGGTCTGTGC CAACGCCCTG
GCCCTGCGCG CCGACATGGG GCTGGAGCTG GGGCGCAGTC TGCATGTTTC CTCCTATGGG
CTGCTTGGTT ACGCCGCGCT CTCGGCTGCC ACCTTTGGTG ACGCCTGGCG CCTGCTGCTG
CAGTACCCGG CGCTGCTTGG CACCTACTTC CGCCTGGAGC TGCAGGTGGA GGGCGAGCTG
GCCTGGATCT GCGCGGGTGG CTACCGCGAT GCCGCGACGC TGGAGGTGTT CAACGTGGAG
ATGTGCCTGG CCTCGCTGAA ACTGATCGGT GACGAGCTGC TGGGCCAGCC GCTGGCGCTG
GCGCGCGCCG AATTCAGCTA CGCCGAGCCG CATTACGTCG AGCGCTATGC GCAGAGCTTT
CCCTGCCCGC TGCGTTTCGC GGCGCGGCGC AATGCCTTCG CCTTTCCCGC GGCGCTGCTG
GAGCGCCGCC TGCCGCTGGC CGACAGCGTC ACCCATGGCG ACATGGTGGA ACGCTGCCGT
CGCCTGAACG CCGAGTTCAG CAGCCGCCAG GCCTGGCTGG AACGGGTACG CCAGCTGCTC
GCCGTGCAAC TGGCCGAGCC GCCGGGGCTG GAAAATCTGG CGCAGCAGAT GCACTGCTCA
CCGCGCACGC TGCGTCGCCA CCTGCAGGAG CTGGGCACCA GCTACCAGGG CCTGCTCGAC
GAGCTGCGCT TCGAACGTGC CAAGGCGCTG CTCAGCGAGG AGCAATGGCC GGTGTATCGC
ATCGCCGAGG TGCTCGGCTT CAGCGAGACC GCCAGCTTCC GCCATGCCTT CCAGCGCTGG
AGCGGCGTAC CGCCGAGCCG CTTTCGCGCT TGA
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| Protein sequence | MLHAPLTTLH VVSLILQRFA DQPELQPQLL AGSGIGAAEL ECPDARITRV QELQVCANAL
ALRADMGLEL GRSLHVSSYG LLGYAALSAA TFGDAWRLLL QYPALLGTYF RLELQVEGEL
AWICAGGYRD AATLEVFNVE MCLASLKLIG DELLGQPLAL ARAEFSYAEP HYVERYAQSF
PCPLRFAARR NAFAFPAALL ERRLPLADSV THGDMVERCR RLNAEFSSRQ AWLERVRQLL
AVQLAEPPGL ENLAQQMHCS PRTLRRHLQE LGTSYQGLLD ELRFERAKAL LSEEQWPVYR
IAEVLGFSET ASFRHAFQRW SGVPPSRFRA
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