| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0107 |
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| Symbol | |
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| ID | 5106292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 106434 |
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| End bp | 108515 |
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| Gene Length | 2082 bp |
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| Protein Length | 693 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640501323 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_001185613 |
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| Protein GI | 146305148 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGAACC CGGCCAATGA AACCCATTTC AGCCTGACCA TCGAAGGCGT CGAGCACGAT
CTGCAGGTGC TCGAATTCAA CGGCCGCGAG GCCATCAGCC AGCCCTATCG CTTCGACGTC
GAGCTGATCA GCGAACGCCC GGATCTCGAT CTGACCAGTC TGCTGCATCA GCGCGCCTTC
CTCGCCTTCA GCCCCAATGG CGACGGCATC CACGGCCTGA TCCACCGGGT CGAGCAGGGC
GAGTCCGGCA AACGCCTGAC CCGCTATCGC CTGGCCATCG TGCCGCAGCT CGCCTACCTG
GCGCACCGCA CCAACCAGCG CATCTTCCAG CACCTGACGG TGCCGCAGAT CATCGCTCAG
GTGCTGGAAG AACATGGCAT CGTGGAGGGC CGCTACCAGT TCCAGCTAGG CCCCAGCGTC
TACCCGCAGC GCGAGTACTG CGTGCAGTAC GACGAGAGCG ACCTGCACTT CGTCCAGCGC
CTGTGCGAGG AAGAAGGCAT CCACTACCAC TTCCAGCACA GCGCAAGCGG CCATGTGCTG
ACCTTCGGCG ACGACCAGAC CGCCTTCGCC AAGCTCGGCC AGCCTACGCC CTATATCCAG
GACAGCGGCA TGACCGCCGA CGATCCGGTG ATCAAGCGCC TGGCCCTGCG CCTGGAAACC
CGCACCCGCA GCACCGCCCG CCGCGACTAC GACTTCGAGC AGCCGAGGCT GCTGCTGGAG
GCGGCCTACC AGGGCGAGCA GGCCGGCGAA AACGACGGCC TGCCCGATCT GGAAGACTAC
GACTACCCCG GCCGCTACAC CGACCGCACG CGCGGCAAGC ACCTGGCCAA ACGCGCCCTG
GAGCGCCACC GCGCCGACTA CCAGCAACTG CAAGGCCAGA GCGACCAGCC GCGGCTGGTT
ACGGGGCATC TGCTGGAAAT CTCCGAACAC CCGCGCCGCG AATGGAACGA CCTCTGGCTG
CTCACCGAAG TGCTGCACGA AGGTAAACAG CCGCAGGTGC TGGAGGAGTC GGTGTTGAAC
CTCCCCTCTC CCCCCGGGAG AGGGGCCGGG GGTGAGGGTA CTTCAGGCGA CACCGACTTC
ACCCAAGGCT ACCGCAACCG CTTTCTCGCC ACCCCCTGGG ACGTGCCCTT CCGACCGCCC
TTGGTCCACC CCAAACCGCG CGTCCTCGGC AGCCAGAGCG CCGTGGTCAC GGGCCCTGCC
GGCGAGGAAA TCCACTGCGA CGAATACGGT CGAGTGAAGG TGCAATTCTT CTGGGATCGC
GAAGGCCAGG CCGACGAGAA GACCAGCTGC TGGCTGCGCG TCAGCTCCAG CTGGGCTGGC
GATCGCTACG GCGCCATCAC CATCCCGCGC ATCGGCATGG AAGTGCTGGT CACCTTCCTC
GAAGGCGACC CCGATCAACC GCTGGTCACC GGCTGCCTCT ACCACGCCGA ACACCTGGTG
CCCTACGACC TGCCGGCAAA CAAGACCCGC AGCGTGTTCA AGACCCTGAG CAGCCCTGGC
GGTGGCGGCT ACAACGAACT GCGCATCGAG GATCGCAAGG GCGCCGAGCA GATCTACATC
CACGCCCAGC GCAACTGGGA CGAGAACATC GAGCACGACC AGAAGATCCG CGTCGGCAAC
GAACGCCACG ACACCGTGGA GAAGAACAGC TACACCGAAT TGCTGGCCGA GGAGCACCTC
ACCGTCACCG CCGACCGCAA GGTCGAGGTC AAGCCCCAGG ACCACCTGAC GGTGGCCACC
GACCAACACA TCAAGCTGGG CACCGCGCAA CTGACCAAGG CCGGCCGCGA GATCCACCTG
AAGGCCGGGC AGAAGATGGT CATCGAAGCC GGCATCGAAC TGACGATCAA GGCCGGCGGC
AGCTTTATCA AACTCGACCC CGGCGGCATC ACCATCTCCG GCCCGCTGGC CAGGATCAAC
GCCGGCGGTT CGCCAGGCAA GGGCTCGGGG CTCAAGATCA AACCGCCGGT GCTGCCGGGT
ATGGCGGATA GCGACAAGGC GGGGAGTTTG TTGGAGCAGG CGGTTGGTAA TGCGCTGACG
CCCAAGGCAA AACCCAAACG CACGCTGAAC TTCTCCGGTT AA
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| Protein sequence | MLNPANETHF SLTIEGVEHD LQVLEFNGRE AISQPYRFDV ELISERPDLD LTSLLHQRAF
LAFSPNGDGI HGLIHRVEQG ESGKRLTRYR LAIVPQLAYL AHRTNQRIFQ HLTVPQIIAQ
VLEEHGIVEG RYQFQLGPSV YPQREYCVQY DESDLHFVQR LCEEEGIHYH FQHSASGHVL
TFGDDQTAFA KLGQPTPYIQ DSGMTADDPV IKRLALRLET RTRSTARRDY DFEQPRLLLE
AAYQGEQAGE NDGLPDLEDY DYPGRYTDRT RGKHLAKRAL ERHRADYQQL QGQSDQPRLV
TGHLLEISEH PRREWNDLWL LTEVLHEGKQ PQVLEESVLN LPSPPGRGAG GEGTSGDTDF
TQGYRNRFLA TPWDVPFRPP LVHPKPRVLG SQSAVVTGPA GEEIHCDEYG RVKVQFFWDR
EGQADEKTSC WLRVSSSWAG DRYGAITIPR IGMEVLVTFL EGDPDQPLVT GCLYHAEHLV
PYDLPANKTR SVFKTLSSPG GGGYNELRIE DRKGAEQIYI HAQRNWDENI EHDQKIRVGN
ERHDTVEKNS YTELLAEEHL TVTADRKVEV KPQDHLTVAT DQHIKLGTAQ LTKAGREIHL
KAGQKMVIEA GIELTIKAGG SFIKLDPGGI TISGPLARIN AGGSPGKGSG LKIKPPVLPG
MADSDKAGSL LEQAVGNALT PKAKPKRTLN FSG
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