Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0089 |
Symbol | |
ID | 5106274 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 84279 |
End bp | 85841 |
Gene Length | 1563 bp |
Protein Length | 520 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640501305 |
Product | ImpA domain-containing protein |
Protein accession | YP_001185595 |
Protein GI | 146305130 |
COG category | [S] Function unknown |
COG ID | [COG3515] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03362] type VI secretion-associated protein, VC_A0119 family |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGTACT CCAGCAAGCT CACCGCTCAT TATCTCAATC TGGCTAAATC CCCTATTAAT GAAGGGAACT TCGCCGGTGA AGACGTGCGT TATTCCAGCG AATACGAAAT GCTGGAAACC GAGCTGGGCA AGGCCTCCTC GCTGCATGAA ACCGGCGCCA TCGACTGGCA GAAGGTGCGC GAGGGCAGCG AGAACCTGCT GACCACCCAA TCCAAGGATC TGCGCGCCGC CACCTGGCTG ACCTGGGGCC TGTTCCAGCG CGAATCCTTC GCCGGCCTGC AGGCCGGTCT GAACCTGCTG CACTACCTCT GCGAACACCA CTGGCACGAG CTGCACCCGC GCAAGGCGCG GACCCGCACC GCCGCCATCA ACTGGCTGCT GCCGCGCCTG GAACAGGCGC TGGCCGAACA CGTGCCGATC AGCGAGCAGC TGCCGCTGTT TCGCCGTCTG GCCGAACACC TGCACGGTCT GGAAGCCGCC CTGTCGAGCC ACCTCGGCGA GGACTCGCCG CTGCTGCTGC CGTTGTGCCG CCGCCTCGAC GAGCAGATCA AGCGGGCCAG CCAGGGCCAG GCCGAGCCGG GCGCAGTCGG CGCCGCCATT GCCCAGGTCA AGCAGGTCGC CACCCAGATC ATCACCGGCA GCGGTCCCAT CGAAAGCGAG AAGGATGCCC ACAAGGCCCT GCGCAGCCAG CAGGACGCCG CCCGCCCGCT GTGCGCCTGG TGGCTGAAGA ACAAGGCCAC CGACCTCAAG CCGCTGCGCC TGGCGCGTAC CCTGCTGTGG CTGCCCATCG AGTCGCTGCC CGAGCGCAAC GCCGAACAGA TCACCGCCCT GCGCGGCCTG CCGGCCGACA AGCTGGCCTC CTACAAGGAA CGTTTCGCCC AGGGCGCCTA CGCCGACCTG CTCGCCGATC TGGAAGCCAG CATCGCCCGC GCGCCGTTCT GGCTCGATGG CCAGCGCCTG GTCTGGGAAT GCCTGCAGGA GCTCAAGGCC GAGCAGGCCA TGCGCGAAGT GGAAATCCAG CTCGCCCTGT TCCTGCAGCG CGTGCCCGGC CTCGACGAGC TGCGCTTCCA TGACGGCGTG CCCTTCGCCG ATGCCGAGAC CCGTGCCTGG ATCGGTGCCC ATGTGCTGCC GCACCTGCAG GCCCCGGAAG TGGAGAAGAA GCCTGCCGCC AGCGAGCAGG GCGCCACGCC GCCCTGGGAA GAGGCGCTGC AGCAGGTGCT GCCCGGCCTG CGCAAGGACG GCCTGAAGGC CGCCGTGCAG CAGCTCAAGC AGGGCATGTC GCGCGCCCGT GGCGGCCGCG AACGCTTCTT CTGGCAACTG ACCCTGGCCC GCCTGTGCTT CGCCGCGAAG AAGTACGACC TGGCCAAGAC CCAACTCGAA TCGCTCGACC AGACGCTGCA GGCCGCCGGC CTCGGCGAGT GGGAACCCGA TCTCGCCCTG GACGTGCTGC GCCTGCTGCA CCACTGCTGC GAGCTGCTGC CGCAGAACCA TGCGGTGCGC GACAGCAAGG ACGAGATCTA TCGCAGGTTG TGCCACCTCG ATCTCGAGGT GGTGCTGGAG TAA
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Protein sequence | MTYSSKLTAH YLNLAKSPIN EGNFAGEDVR YSSEYEMLET ELGKASSLHE TGAIDWQKVR EGSENLLTTQ SKDLRAATWL TWGLFQRESF AGLQAGLNLL HYLCEHHWHE LHPRKARTRT AAINWLLPRL EQALAEHVPI SEQLPLFRRL AEHLHGLEAA LSSHLGEDSP LLLPLCRRLD EQIKRASQGQ AEPGAVGAAI AQVKQVATQI ITGSGPIESE KDAHKALRSQ QDAARPLCAW WLKNKATDLK PLRLARTLLW LPIESLPERN AEQITALRGL PADKLASYKE RFAQGAYADL LADLEASIAR APFWLDGQRL VWECLQELKA EQAMREVEIQ LALFLQRVPG LDELRFHDGV PFADAETRAW IGAHVLPHLQ APEVEKKPAA SEQGATPPWE EALQQVLPGL RKDGLKAAVQ QLKQGMSRAR GGRERFFWQL TLARLCFAAK KYDLAKTQLE SLDQTLQAAG LGEWEPDLAL DVLRLLHHCC ELLPQNHAVR DSKDEIYRRL CHLDLEVVLE
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