| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0087 |
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| Symbol | |
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| ID | 5106272 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 81460 |
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| End bp | 82836 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640501303 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001185593 |
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| Protein GI | 146305128 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGAGT TGATGGCGAT TCTGCTGTTC GTCAGCATCT GCCTGGCGCT GATGGCCGGT
TATCCGGTGG CCTTCACCCT GGCCGGGGTG TCTCTGCTGT TCGCCGGCAT CGGCGTGCTC
ACCGGTACCT TCGATGCCGG ATACCTGAGT GCCCTGCCCA ACCGCCTGTT CGGCATCATG
AACAACCAGA CCATGCTGGC CGTGCCGCTG TTCGTGTTCA TGGGGGTGAT GCTGGAACGC
TCGCGAGTGG CCGAGGATCT GCTCGAGTCC ATGTCGCGCC TGTTCGGCAC CCTGCGTGGC
GGTCTGGCGA TTTCCGTGTG CGTGGTCGGC GCCCTGCTGG CCGCTTCCAC TGGCATCGTC
GGTGCCACCG TGGTGACCAT GGGCCTGCTG GCGCTGCCGA CCATGCTGCG CCGCGGCTAT
GATCCGGCCA TTTCCACCGG CACCCTGGCG GCTACCGGCA CGCTGGGCCA GATCATCCCG
CCGTCCATCG TCCTGGTGCT ACTCGGCGAC GTGATGTCCA GCGCCTATCA GCAGGCGCAG
CTGAAGATGG GCATCTTCTC GCCGAAGACC GTCTCGGTCG GCGACCTGTT CGTCGGCGCC
CTGCTGCCCG GTCTGCTGCT GGTCGGCCTG TACATCCTCT ATATCGTCGG CACCGCGATC
TTCCAGCCGA AGAAGCTGCC GGCGCTGCCG CAGGAAGAGC TGGGGCCGAT CGAGTGGGGC
AAGCTGATCA AGGCGCTGGT ACCGCCGCTG ATCCTGATCG GCGCGGTGCT CGGCTCGATC
CTCGCCGGCT ATGCCACGCC CACCGAGGCC GCGGCATTGG GCGCCGTGGG TGCGATGCTG
CTGGCGGCGA GCAAGGGCAA GCTGAATTTC GGCCAGCTCA AGGAAGTGGC CTACGGCACC
ACCGAGATCA GCGCCATGGT CTTCATGATC CTGATCGGCG CCTCGCTGTT CTCCCTGGTA
TTCCGCGGTT TCGGCGGCGA GCACATGATC GAGGAAGTGT TCGCCCAGCT GCCGGGCGGC
GTGCTTGGCG CCTTCTTCCT GGTGATGCTG GTGATCTTCC TGCTCGGCTT CATCCTCGAC
TTCATCGAGA TCACCTTCGT GGTGGTGCCG ATCGTCGGGC CGGTGCTGCT GGCCATGGGG
CTCGACCCGA TCTGGCTCGG CGTGATGATC GCGCTGAACC TGCAGACCTC CTTCCTCACC
CCGCCGTTCG GCTTCGCACT GTTCTACCTG CGCGGGGTGA CGCCGGCATC GGTGGCCACC
AGCACCATCT ACAAGGGTGT GGTGCCGTTC ATCCTGATCC AGATCCTGCT GCTGGTGATC
GCCTACATGT TCCCGGGGCT GATCACCTGG CTGCCGGAAC AGGTCTACGG CAAGTAG
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| Protein sequence | MAELMAILLF VSICLALMAG YPVAFTLAGV SLLFAGIGVL TGTFDAGYLS ALPNRLFGIM
NNQTMLAVPL FVFMGVMLER SRVAEDLLES MSRLFGTLRG GLAISVCVVG ALLAASTGIV
GATVVTMGLL ALPTMLRRGY DPAISTGTLA ATGTLGQIIP PSIVLVLLGD VMSSAYQQAQ
LKMGIFSPKT VSVGDLFVGA LLPGLLLVGL YILYIVGTAI FQPKKLPALP QEELGPIEWG
KLIKALVPPL ILIGAVLGSI LAGYATPTEA AALGAVGAML LAASKGKLNF GQLKEVAYGT
TEISAMVFMI LIGASLFSLV FRGFGGEHMI EEVFAQLPGG VLGAFFLVML VIFLLGFILD
FIEITFVVVP IVGPVLLAMG LDPIWLGVMI ALNLQTSFLT PPFGFALFYL RGVTPASVAT
STIYKGVVPF ILIQILLLVI AYMFPGLITW LPEQVYGK
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