| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0083 |
|---|
| Symbol | |
|---|
| ID | 5106268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 77048 |
|---|
| End bp | 77680 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640501299 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001185589 |
|---|
| Protein GI | 146305124 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCTG CCACCATACG AATTGCCCTG ATAGACGACC ACGCTCTGGT GCGCGAAGGT
ATTCGCGCGC TGCTCGAGGT GCTGCCTCAT TTCCAGGTCG TCGGCGAGGC CGGCAGTGGC
GCCGAGGCGT TCGACCTGCT GCAGCGCACC CCAGTCGACA TCCTGCTGAT GGATGTGGGC
CTGCGCGACA TCAACGGGCT GGAACTGACC CGCCAGCTGC GCGAGCGCTA CCCCGCCATA
AAGGTGTTGA TGCTGAGCAT GTACGACAAT CAGGAGTACG TGAGCAGCTC GCTGGCGGTG
GGCGCCAGCG GCTACGTTCT GAAGGAAGCG CCTTCCCGGG AAATCGTCGC GGCTATCGAA
GCCATTGCAG CCGGCGGCAG CTTCTACAGC GGCGATATCG CGCGCAAGCT GGTCAAGCCG
GCCCCCAGCG AAGACGAACT GACGCCGCGC GAACGCGAGG TGCTGCTGAT GCTCGCCCAG
GGTCTGAACA ACAAGGTCAT GGCCCGCACC CTGCAGATCA GCGTGCGCAC CGTGGAAACC
CATCGCCTGA GCATCAGGCG CAAACTGGCT ATCGACAAGC CGGCAGACCT GCTCAAGCAT
GCCCTGGCCC ATGGCTGGGT ACCCTACGAC TAG
|
|---|
| Protein sequence | MTAATIRIAL IDDHALVREG IRALLEVLPH FQVVGEAGSG AEAFDLLQRT PVDILLMDVG
LRDINGLELT RQLRERYPAI KVLMLSMYDN QEYVSSSLAV GASGYVLKEA PSREIVAAIE
AIAAGGSFYS GDIARKLVKP APSEDELTPR EREVLLMLAQ GLNNKVMART LQISVRTVET
HRLSIRRKLA IDKPADLLKH ALAHGWVPYD
|
|---|
| |