| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0063 |
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| Symbol | |
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| ID | 5106248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 60029 |
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| End bp | 60949 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640501279 |
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| Product | substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_001185569 |
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| Protein GI | 146305104 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGAA TCAACGCGCT GTTGCTGGCC GGAGCGCTGT CCGCCAGCGC CAACGTCTGG
GCCGAGGACG CGGCCTGCGC CACGGTCAAG CTGGGCGATC CGGGCTGGAG CGACATCGCC
GTGACCAACG GCATCGCCAG CTTCCTGCTC GAAGGCCTCG GCTACCAGAC GCAGAGCCAG
ACCCTGGCGG TGCCGATCAT CTACGCCGGG CTGCAGAAGG GTCAGCTCGA CGTGTTCCTC
GGCAACTGGA TGCCGGCGCA GCAGAGCAAC TACGACAAGT TCGTCGCCAG CGGCGAGGTG
GACCAACTGG CGCAGAACCT CGACGGCACC GAGTACACCC TGGCGGTGCC GACCTATGCC
TTTGATGCCG GTGTGAAGAC CTTCGCCGAC CTCGACAAGC ACGCCGACAA GTTCGGCAAA
AAGCTCTACG GCATCGCCTC CGGCTCGCCG GCCAACGAAT CGATCAAGCA GATGATCGCC
GCCGACGAGT TCGGCCTGGG CGACTGGCAA CTGGTGGAGT CCAGCGAGCA GGCGATGCTG
GTGCAGGTCG GCCGCGCGGT CAAACGCGAG CAGTTCGTGG TGTTCCTCGG CTGGACCCCG
CACCCGATGA ACGTGCAGTA CGACATGAAA TACCTGCGCG GCGGCGAGAA GTATTTCGGC
GACAGCGGCC AGGTCAACAC CCTGGCGCGC AAGGGCTATG CCCAGCAGTG CCCCAATGCC
GGCAAGTTGC TGAGCAACCT CAAATTCACC CAGGAGATGG AGAACAGCAT CATGGATCGG
GTGCTCAGCA AGCAGGCCAG CAACGCCCAG GCGATCAAGG ACTGGCTGCA GGCCAACCCG
CAGGTGCTCG ACGCCTGGCT GGACGGGGTC ACCACCCGCG ACGGCGGCGA CGGCCTGGCC
GCGGTCAAGG CGCGGCTTTG A
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| Protein sequence | MNRINALLLA GALSASANVW AEDAACATVK LGDPGWSDIA VTNGIASFLL EGLGYQTQSQ
TLAVPIIYAG LQKGQLDVFL GNWMPAQQSN YDKFVASGEV DQLAQNLDGT EYTLAVPTYA
FDAGVKTFAD LDKHADKFGK KLYGIASGSP ANESIKQMIA ADEFGLGDWQ LVESSEQAML
VQVGRAVKRE QFVVFLGWTP HPMNVQYDMK YLRGGEKYFG DSGQVNTLAR KGYAQQCPNA
GKLLSNLKFT QEMENSIMDR VLSKQASNAQ AIKDWLQANP QVLDAWLDGV TTRDGGDGLA
AVKARL
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