Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0056 |
Symbol | |
ID | 5106241 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 52207 |
End bp | 53244 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640501272 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001185562 |
Protein GI | 146305097 |
COG category | [S] Function unknown |
COG ID | [COG1652] Uncharacterized protein containing LysM domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 57 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGGAAAT CACTACTCGC CCTGCTCTTT GCAGCTGGCG GACTGGCCCT GACCAGCTTG GCTCAGGCCG AAGTGCAACT CAAGGACGGT CACCCGGACC GCTACACCGT GGTCAAGGGC GATACCCTCT GGGACATTTC CGGCAAGTTC CTGCGTCAGC CGTGGAAGTG GCCGGAGATC TGGCACGCCA ACCCACAGGT GGCCAACCCG CATCTGATCT ACCCTGGGGA CACTCTCAAT CTGGTCTATG TCGACGGCCA GCCACGCCTG ATGCTCAACC GCGGCGAGTC GCGCGGTACC ATCAAGCTGT CGCCGCAGGT GCGCAGCACG CCGATGGCCG AGGCGATCCC GACCATTCCG CTGGAGGCGA TCAACAGCTT CCTGCTGAGC AACCGCATCG TCGATACCCC GGAAGAGTTC AACGGCAAGC CCTACATCGT CGCCGGCAAC GCCGAGCGTG TGGTCAGTGG CGCCGGTGAC CGCGTCTACG CTCGCGGCCA GTTCGACGAA CAGCATCCGA TCTACGGCAT CTTCCGTCAG GGCAAGACCT ACGTGGATCC GGAAACCAAG GAATTCCTCG GCATCAACGC CGATGACATC GGCTCCGGCG AGATCGTCGC CGAGGAAGGC GATGTCGGGA CCCTGCTGCT GAAGCGCTCG ACTCAGGAAG TACGCCTGGG TGACCGCCTG TTCCCCACCG AAGAGCGGGC GATCAACTCC ACCTTCATGC CCAGCGAGCC GGCGGGCGAG ATCAAGGGTC TGATCCTCGA CGTGCCGCGT GGTGTGAGCC AGATCGGACA GTTCGACGTG GTCACCTTGA ACAAGGGCGC GCGCGACGGC CTGGAAATCG GCAACGTGCT GGCGGTGTAC AAGACCGGCG AGACCGTACG CGACCGCGTC ACTGGCGAGA GCGTGAAGAT TCCGGATGAA CGCTCCGGTC TGCTGATGGT GTTCCGCACC TACGACAAGC TCAGCTACGG CCTGGTGCTG CAGGCCAGCC GGCAGCTGGC GGTGATGGAC AAGGTCCGCA ACCCGTAA
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Protein sequence | MRKSLLALLF AAGGLALTSL AQAEVQLKDG HPDRYTVVKG DTLWDISGKF LRQPWKWPEI WHANPQVANP HLIYPGDTLN LVYVDGQPRL MLNRGESRGT IKLSPQVRST PMAEAIPTIP LEAINSFLLS NRIVDTPEEF NGKPYIVAGN AERVVSGAGD RVYARGQFDE QHPIYGIFRQ GKTYVDPETK EFLGINADDI GSGEIVAEEG DVGTLLLKRS TQEVRLGDRL FPTEERAINS TFMPSEPAGE IKGLILDVPR GVSQIGQFDV VTLNKGARDG LEIGNVLAVY KTGETVRDRV TGESVKIPDE RSGLLMVFRT YDKLSYGLVL QASRQLAVMD KVRNP
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