| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0048 |
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| Symbol | |
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| ID | 5106722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 44699 |
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| End bp | 45499 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640501264 |
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| Product | type III secretion protein SpaR/YscT/HrcT |
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| Protein accession | YP_001185554 |
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| Protein GI | 146305089 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4791] Type III secretory pathway, component EscT |
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| TIGRFAM ID | [TIGR01401] type III secretion protein SpaR/YscT/HrcT |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATTGG ATGCCCAGGC CGCTTTCGAG CTGATGCTGG GGCTAGGTCT CGGCGTGGCC
CGCCTGCTGC CCTGCATGCT GCTGGTGCCT GCATTCTGTT TCAAACACCT CAAAGGCATT
CTGCGTTATG GCGTGGTGAT CGCCGTGGCG ATGATCCCGG CCCCTTCGAT CGGCGAGGCC
CTGGCCAGTG AGGGGGCCAG TTTCGGCGTG GTCATGGGGC TGCTGATCAA GGAGGTCATG
CTCGGTGCGC TGCTTGGCGT GTTGCTGCAC ATGCCGTTCT GGATGTTCGC CTCGGTCGGC
GCTTTGCTCG ACAGTCAGCG TGGTGCTCTC AGTGGTGGTC AGCTCAACCC GGCGCTCGGC
CCGGACGTGA CGCCGATGGG CGAGCTGCTG CAGGAAGTGC TGGTAATGCT GGTCATTCTG
TTCGGCGGGT TACCTTTGAT TACCCAGGTG ATCTGGGACA GCTACTTGAT CTGGCCGCCC
ACGGTCTGGC TGCCGATCCT GACCGAGGAC GGCCTGGGCG TGCTGCTCTC GCAACTCAGC
CGAACGTTGC AGCACATGCT GCTCTATGCC GCGCCCTTCA TTGCCCTGCT GCTGCTGATC
GAGGCGGCCA TGGCGATCAT CAGTCTGTAT GCGCAACAAC TGAACGTATT CATCCTGGCA
ATGCCGGCCA AGAGCATTGC CGGGCTGGCT TTCTTGCTGA TCTATCTGCC CACGCTTCTC
GAACTGGGTG GTGGGGAGGT TCAGCAGTTT CAGCTTCTCA AGCAACTGCT GGGCAGCCTC
GTCCAGGTGC CGGTGCCATG A
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| Protein sequence | MPLDAQAAFE LMLGLGLGVA RLLPCMLLVP AFCFKHLKGI LRYGVVIAVA MIPAPSIGEA
LASEGASFGV VMGLLIKEVM LGALLGVLLH MPFWMFASVG ALLDSQRGAL SGGQLNPALG
PDVTPMGELL QEVLVMLVIL FGGLPLITQV IWDSYLIWPP TVWLPILTED GLGVLLSQLS
RTLQHMLLYA APFIALLLLI EAAMAIISLY AQQLNVFILA MPAKSIAGLA FLLIYLPTLL
ELGGGEVQQF QLLKQLLGSL VQVPVP
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