| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0033 |
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| Symbol | |
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| ID | 5106708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 31594 |
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| End bp | 32523 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640501250 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001185540 |
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| Protein GI | 146305075 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAGGG GGGTCGCCGC AGAAAAAAGT GCGCGCAGAC ATGGTGGTAC GGACGTTCCC
GAGTTGGGCA TTACGCTATC TGCAGGACAT TTCAGAATGG ACCTGCTTCT GTGTGGGGAA
ACTGGAACTG GCAAAGATGT GCTGGCGAGG CACATCCACG ATCTGTCCGG CAGGACAGGC
GCTTTCGTCG GCATAAACTG CGCCGCCATT CCGGAGGCAT TGGCCGAAAG CCAGCTATTC
GGTGTTGCCA GCGGTGCTTT CACTGGGGCC AACCGGTCAC GCCAGGGTTA TATCGAAGCC
TCGAACGACG GTACGCTGTA CCTCGACGAG ATCGACAGCA TGCCCCTGCA ACTACAGGCG
AAGCTGCTGC GCGTGCTTGA GACCCGTGGC GTCGAACGCT TGGGCACGAC GAAATTCATC
CCTCTCAATC TGCGGATCAT CGCCTCGACG CAACGCCCTC TCGAAGAGCT GGTGGAGCAG
GGACTGTTTC GCCGCGACCT GCTTTTCCGG CTCAATGCAA TGACGCTGTC ATTGCCTCCC
TTGCGCCAGC GGCGCGAGTT GATCCTGCCG CTGTTCAAGC GATTCACCCG AAGCCTTGGC
GCGAAGCAGG CAAATGGCGC ACAAGCCCTG GACTCTCAAC TGATCCAGCT ACTGCTCAGC
CACCCCTGGC CGGGCAATAT CCGTGAACTG AAGTCCGCCG CCAAACGCTA CGTGATAGGA
CTGCCGCCTA TCGATGCCGG CGTCCTTGCT GATCTCGAAG ACGGTGATTT TCCCCACGAC
AGGGGGCTCA AGAAGCGCAT GCGCGCTGTG GAGAAAATGC TCATTCAGGA CGCCTTGAAG
CGTCACAAGA ACGGTCTGGA GGCAGTCGCC GAGGAGCTCG GCATATCCCG TCGTACCCTG
TATCAGCGAA TAAAGGAACT TGACGTCTAG
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| Protein sequence | MSRGVAAEKS ARRHGGTDVP ELGITLSAGH FRMDLLLCGE TGTGKDVLAR HIHDLSGRTG
AFVGINCAAI PEALAESQLF GVASGAFTGA NRSRQGYIEA SNDGTLYLDE IDSMPLQLQA
KLLRVLETRG VERLGTTKFI PLNLRIIAST QRPLEELVEQ GLFRRDLLFR LNAMTLSLPP
LRQRRELILP LFKRFTRSLG AKQANGAQAL DSQLIQLLLS HPWPGNIREL KSAAKRYVIG
LPPIDAGVLA DLEDGDFPHD RGLKKRMRAV EKMLIQDALK RHKNGLEAVA EELGISRRTL
YQRIKELDV
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