Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0026 |
Symbol | |
ID | 5106701 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 26417 |
End bp | 27004 |
Gene Length | 588 bp |
Protein Length | 195 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640501243 |
Product | HrpE/YscL family type III secretion apparatus protein |
Protein accession | YP_001185533 |
Protein GI | 146305068 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02499] type III secretion apparatus protein, HrpE/YscL family |
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Plasmid Coverage information |
Num covering plasmid clones | 46 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 66 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTGACTA AACGCCGCTT CACCCTTGGC TCAGCGGTAC TCGAAGAACC GATTCTGCGC CGACAGCTGC TTGCAGAAAG CCTGCGCGCG GACGAGCTTC TGGCCCAAGC ACGCCTGCAG GCCGAACAAT TGCTGCAGCA GGCCCACGAG CAGCGCCAGC ACTACCTCGA TGAAGCCGTC GCCCGCTTCT GGAGCGAAGC CAACGCACTG CTTCAGGCGA TACAGGAGGA ACGCGCAAGT TATCAGCGCG ATGCCTTGTC CGCTGTCGAC TCGCTATTGA ACATCGCCCT GTCGCGTTTG CTGGATGAAA CGGATCTGCC GCAGCGGATC AGCGCATTGC TGCGCAACCT GGTCGTTGGC CTGCCAAGCA AGGCGGAGGC GAACCTGGCC TGTCACCCCG AAGCCGCCAG CACGGTTCGC GCCTGGCTGC AGACGATGGG CTTCGACGCG CTCTGGCAGG TGCAGGAAGA CCCAGGCATG GCACCTGAAT CGCTACGCCT GAGCAACACG CTGGGTACCT TTCACATCGA CTGGCCGTCG TTGCGGCGCG GGCTGATACC GAGCCTGCCC GAAGCCCGGC ATGCCTAA
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Protein sequence | MLTKRRFTLG SAVLEEPILR RQLLAESLRA DELLAQARLQ AEQLLQQAHE QRQHYLDEAV ARFWSEANAL LQAIQEERAS YQRDALSAVD SLLNIALSRL LDETDLPQRI SALLRNLVVG LPSKAEANLA CHPEAASTVR AWLQTMGFDA LWQVQEDPGM APESLRLSNT LGTFHIDWPS LRRGLIPSLP EARHA
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