Gene Pmen_0008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0008 
Symbol 
ID5106683 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp8497 
End bp9834 
Gene Length1338 bp 
Protein Length445 aa 
Translation table11 
GC content68% 
IMG OID640501225 
Productdual specificity protein phosphatase 
Protein accessionYP_001185515 
Protein GI146305050 
COG category[T] Signal transduction mechanisms 
COG ID[COG2453] Predicted protein-tyrosine phosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.851139 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones64 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACAACA CGCGCGAACA GGGATTGTGG AAGCGCGGCG TACTCTGGCT GCTGTTGCTC 
GGCCCGCTGT TCTTCGCCAG CTACGGCTTC GCCAACTGGC TGACCGGGCA GCGCGATGAT
GTCGGCAGCC TGGTCTTCGC CTGGGAACCA CAGATCCCGC TGTGGCCCTG GACCATCGTG
CCGTACTGGT CGATCGACCT GCTCTATGGC CTGTCCTTCC TGTTGCCGGC CTGCCGCCGC
GAGATGGATC GCCACGCCCT GCGCCTGCTC GCCGCGCAGG TGATCTGCGT CGCCTGCTTC
CTGCTCTGGC CGCTGCGCTT CACCTTCGAG CGGCCGCCGC TGGACGGCGC CTTCGGCCTG
ATGTTCGACG TGCTGATGGG CTTCGACAAA CCCTTCAACC AGGCGCCGTC GCTGCATATC
ACCCTGCTGG TAATCATCTG GGCGATGTTC GCCAATCACA CCCGCGGCCC GTTCTGGCGT
GGCCTGCTGC ACGGGTGGAT GGCGCTGATC GGCATCTCCG TGCTGACCAC CTGGCAGCAT
CACTTCATCG ACCTGCCCAC CGGGGCGCTG GCGGGCTTCT TCTGCCTGTG GCTGCTGCCG
CTGCAGGGCG CTACGCCGCT TACGCAGATG CGCCTCACCA GCGATCCACG GCGTTGGCGC
CTGGCGCTGC GCTATGGGCT TGGCGCAACG CTGAGCGCCG TGCTGGCCGT CAAGCTGGGC
GGTGCCTGGC TATGGCTGTT CTGGCCAACC GTTGCCCTGG CCATGGTCGC GCTCAACTAC
CTGTTGTTCG ACGCTGCCGG CTTCCAGAAG CAAGCCAACG GCCGCCTCAG CCCGGCCGCG
ACAGCGTTGC TCGCGCCCTA TCTGCTCGGT GCCTGGATCA ACTCGCGGCT ATGGACCTAT
CGCCAGCCAA TGCCGAGTCA GGTGGTGGAG GGCATCCATC TTGGCCGCCT GCCCGCCACG
GGCGAACTCG GTAGCTATGC CGCCATGGTC GACCTGTGCG CCGAACTGCC GCTGCTGCGC
ACACCTAGCG CCTACTGCAG TCTGCCGTCA CTGGACCTGG TGACGCCGGA TGCGCTGACC
TGCCAACGCG CCGCCGAGGC CATCGAACGT CTGCGCCACG AGGGCCCGCT GCTGGTGTGC
TGCGCCCTGG GCTATTCGCG CAGTGCCACA GCCGTGGCCG CCTGGCTGCT GCACAGCGGC
CGCTGCCAGA GCGTGGATGC GGCCGTGGCG CTGATCCGCC AGGCGCGGCC ACAGGTCGTG
CTTGGCCCGC AGCACCTGGC CGCACTGCAG GGCATGCTCG TTGCCAGCCC GGCCCTGGAG
GTCGCACATG CAGGCTGA
 
Protein sequence
MDNTREQGLW KRGVLWLLLL GPLFFASYGF ANWLTGQRDD VGSLVFAWEP QIPLWPWTIV 
PYWSIDLLYG LSFLLPACRR EMDRHALRLL AAQVICVACF LLWPLRFTFE RPPLDGAFGL
MFDVLMGFDK PFNQAPSLHI TLLVIIWAMF ANHTRGPFWR GLLHGWMALI GISVLTTWQH
HFIDLPTGAL AGFFCLWLLP LQGATPLTQM RLTSDPRRWR LALRYGLGAT LSAVLAVKLG
GAWLWLFWPT VALAMVALNY LLFDAAGFQK QANGRLSPAA TALLAPYLLG AWINSRLWTY
RQPMPSQVVE GIHLGRLPAT GELGSYAAMV DLCAELPLLR TPSAYCSLPS LDLVTPDALT
CQRAAEAIER LRHEGPLLVC CALGYSRSAT AVAAWLLHSG RCQSVDAAVA LIRQARPQVV
LGPQHLAALQ GMLVASPALE VAHAG