Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0008 |
Symbol | |
ID | 5106683 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 8497 |
End bp | 9834 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640501225 |
Product | dual specificity protein phosphatase |
Protein accession | YP_001185515 |
Protein GI | 146305050 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2453] Predicted protein-tyrosine phosphatase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.851139 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 64 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACAACA CGCGCGAACA GGGATTGTGG AAGCGCGGCG TACTCTGGCT GCTGTTGCTC GGCCCGCTGT TCTTCGCCAG CTACGGCTTC GCCAACTGGC TGACCGGGCA GCGCGATGAT GTCGGCAGCC TGGTCTTCGC CTGGGAACCA CAGATCCCGC TGTGGCCCTG GACCATCGTG CCGTACTGGT CGATCGACCT GCTCTATGGC CTGTCCTTCC TGTTGCCGGC CTGCCGCCGC GAGATGGATC GCCACGCCCT GCGCCTGCTC GCCGCGCAGG TGATCTGCGT CGCCTGCTTC CTGCTCTGGC CGCTGCGCTT CACCTTCGAG CGGCCGCCGC TGGACGGCGC CTTCGGCCTG ATGTTCGACG TGCTGATGGG CTTCGACAAA CCCTTCAACC AGGCGCCGTC GCTGCATATC ACCCTGCTGG TAATCATCTG GGCGATGTTC GCCAATCACA CCCGCGGCCC GTTCTGGCGT GGCCTGCTGC ACGGGTGGAT GGCGCTGATC GGCATCTCCG TGCTGACCAC CTGGCAGCAT CACTTCATCG ACCTGCCCAC CGGGGCGCTG GCGGGCTTCT TCTGCCTGTG GCTGCTGCCG CTGCAGGGCG CTACGCCGCT TACGCAGATG CGCCTCACCA GCGATCCACG GCGTTGGCGC CTGGCGCTGC GCTATGGGCT TGGCGCAACG CTGAGCGCCG TGCTGGCCGT CAAGCTGGGC GGTGCCTGGC TATGGCTGTT CTGGCCAACC GTTGCCCTGG CCATGGTCGC GCTCAACTAC CTGTTGTTCG ACGCTGCCGG CTTCCAGAAG CAAGCCAACG GCCGCCTCAG CCCGGCCGCG ACAGCGTTGC TCGCGCCCTA TCTGCTCGGT GCCTGGATCA ACTCGCGGCT ATGGACCTAT CGCCAGCCAA TGCCGAGTCA GGTGGTGGAG GGCATCCATC TTGGCCGCCT GCCCGCCACG GGCGAACTCG GTAGCTATGC CGCCATGGTC GACCTGTGCG CCGAACTGCC GCTGCTGCGC ACACCTAGCG CCTACTGCAG TCTGCCGTCA CTGGACCTGG TGACGCCGGA TGCGCTGACC TGCCAACGCG CCGCCGAGGC CATCGAACGT CTGCGCCACG AGGGCCCGCT GCTGGTGTGC TGCGCCCTGG GCTATTCGCG CAGTGCCACA GCCGTGGCCG CCTGGCTGCT GCACAGCGGC CGCTGCCAGA GCGTGGATGC GGCCGTGGCG CTGATCCGCC AGGCGCGGCC ACAGGTCGTG CTTGGCCCGC AGCACCTGGC CGCACTGCAG GGCATGCTCG TTGCCAGCCC GGCCCTGGAG GTCGCACATG CAGGCTGA
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Protein sequence | MDNTREQGLW KRGVLWLLLL GPLFFASYGF ANWLTGQRDD VGSLVFAWEP QIPLWPWTIV PYWSIDLLYG LSFLLPACRR EMDRHALRLL AAQVICVACF LLWPLRFTFE RPPLDGAFGL MFDVLMGFDK PFNQAPSLHI TLLVIIWAMF ANHTRGPFWR GLLHGWMALI GISVLTTWQH HFIDLPTGAL AGFFCLWLLP LQGATPLTQM RLTSDPRRWR LALRYGLGAT LSAVLAVKLG GAWLWLFWPT VALAMVALNY LLFDAAGFQK QANGRLSPAA TALLAPYLLG AWINSRLWTY RQPMPSQVVE GIHLGRLPAT GELGSYAAMV DLCAELPLLR TPSAYCSLPS LDLVTPDALT CQRAAEAIER LRHEGPLLVC CALGYSRSAT AVAAWLLHSG RCQSVDAAVA LIRQARPQVV LGPQHLAALQ GMLVASPALE VAHAG
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