| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0003 |
|---|
| Symbol | recF |
|---|
| ID | 5106678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2712 |
|---|
| End bp | 3815 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640501220 |
|---|
| Product | recombination protein F |
|---|
| Protein accession | YP_001185510 |
|---|
| Protein GI | 146305045 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1195] Recombinational DNA repair ATPase (RecF pathway) |
|---|
| TIGRFAM ID | [TIGR00611] recF protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTGA GCCGCATCAT GGTCACCGCG GTGCGCAATC TGCACCCGGT GACCCTCTCC
CCCTCCCCCC GCATCAACAT CCTTCACGGC GCCAACGGCA GCGGCAAGAC CAGCGTGCTC
GAGGCCATTC ATCTGCTCGG CCTCGCCCGC TCCTTCCGCA GCACCCGCCT GCAGCCTGTC
ATCCATTACG AACAACCGGC CTGCACCGTT TTTGGCCAGG TGCAGTTGGC CGAAGGTGGC
TCCAGCAATC TGGGGATTTC GCGTGACCGT CAGGGCGAGC TGCAGATTCG TATCGACGGG
CAGAATGCGC GTAGCGCTGC GCAGCTGGCC GATCTGTTGC CTTTGCAGTT GATCAACCCG
GACAGCTTTC GCCTGCTGGA AGGCGCACCG AAGATTCGCA GGCAGTTTCT CGATTGGGGG
GTGTTCCACG TGGAACATCG TTTTCTCGGC GCCTGGCAAC GCCTGCAGAA AGCCCTGCGG
CAGCGGAACT CGTGGCTGCG CCATGGTACA CTTGACGGTG CTTCGCAGGC CGCATGGGAC
CGAGAGCTGT GCAGTGCGAG CCAGGAAATC GACACCTACC GTAGAGCCTA TATCCAGGCG
CTGAAGCCGG TGTTCGAACG CACGTTGGCG GAACTGCTGC AGCTGGAAGG GTTGACCCTG
AGCTATTACC GCGGCTGGGA CAAGGATCGT GAGCTGAGCG AAGTGCTCGC CTCGTCTCTC
CTTCGTGATC AACAGCTCGG GCATACCCAG GCCGGACCGC AGCGCGCCGA TCTGCGTCTG
CGGCTTGCGG GGCATAACGC GGCGGAAATC CTGTCGCGAG GACAACAGAA ACTGGTGGTG
TGTGCGTTGC GCATCGCCCA GGGCCACTTG GTCAATGAAG CCAAGCGTGG CCAATGTATC
TATCTGGTGG ACGATCTACC GTCGGAACTG GATGAGCAGC ATCGTCAGGC ATTGTGCCGG
TTGCTGGAAG ATTTGCACTG CCAGGTGTTC ATCACCTGTG TGGATCATGA ATTGTTGAGG
GAAGGCTGGC ACACGGATAC GCCGGTTGCC ATGTTCCACG TGGAACATGG CCGTATCACC
CAGACCCAAG ACCATCGGGA GTGA
|
|---|
| Protein sequence | MSLSRIMVTA VRNLHPVTLS PSPRINILHG ANGSGKTSVL EAIHLLGLAR SFRSTRLQPV
IHYEQPACTV FGQVQLAEGG SSNLGISRDR QGELQIRIDG QNARSAAQLA DLLPLQLINP
DSFRLLEGAP KIRRQFLDWG VFHVEHRFLG AWQRLQKALR QRNSWLRHGT LDGASQAAWD
RELCSASQEI DTYRRAYIQA LKPVFERTLA ELLQLEGLTL SYYRGWDKDR ELSEVLASSL
LRDQQLGHTQ AGPQRADLRL RLAGHNAAEI LSRGQQKLVV CALRIAQGHL VNEAKRGQCI
YLVDDLPSEL DEQHRQALCR LLEDLHCQVF ITCVDHELLR EGWHTDTPVA MFHVEHGRIT
QTQDHRE
|
|---|
| |