Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_4002 |
Symbol | |
ID | 5081511 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 4656564 |
End bp | 4658189 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640501214 |
Product | 60 kDa inner membrane insertion protein |
Protein accession | YP_001185504 |
Protein GI | 146295080 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000355464 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAATCTC AACGCAATAT ATTGCTCATA GGACTACTGT TTGTCAGCTT TTTGCTGTGG CAACAGTGGC AAGCAGACAA AGCTCCTAAA CCCGTTGCAA CAGAATCGTC CTTAGTGGCG AATGTGGCTA GCACTCACAG TGCCGATGTT CCAGAAGCTG ATACAGGTGT ACCAGCAGCA GTAGCTGCGA GTAAAAATCT TATCACAGTA AAAACTGATC AGCTTGATGT ACAAATCAAC CCTGTAGGTG GCGACATCGT CTTTGCTGCA CTAGTTTCAC ACAAAATGGA GCAAGGTAAA GAGCAACCTT TTGTATTGCT TGAGCAGACA AAAGATTACA CTTATATCGC CCAAAGCGGT TTGATCGGTC GTGATGGTAT CGATAGCAGC GCCAACGGTC GTGCAGCATT CACAACCTCT GCAACTGAAT TCACATTAGC CGAAGGCCAA GACACCTTAG AAGTGCCATT AACCTACGTG GCCGATAATG GCGTAACTTA CACTAAAGTG TTTGTTTTCC ATCGTGGTAA GTTCAACGTA GATGTTGACT ATAAAATCAA CAACACTTCA GCAGCACCGC TGCAAGTTCA GATGTACGGT CAGATTAAAC AAACAATCAA GCCATCTGAA AGCAGTATGA TGATGCCTAC CTACCGTGGT GGTGCGTTCT CAACAAATGA TGTGCGCTAC GAGAAATACA ACTTTGATGA CATGGCCAAA AGCAACCTGA ACCAAGCCAC TTTAGGCGGT TGGGCAGCCA TGTTACAGCA CTATTTCGTT TCAGCTTGGG TGCCACCCGC AACTGACAGT AACACTATTT TTTCAAGTGT CAGTGCTGGC GGTTTAGCGA ATATTGGTTT CCGCGGTGCG GTATACGATA TCGCACCTGG TGCTAGCCAA GAAATTAGCT CACAGTTCTA TGTTGGTCCT AAAGATCAAG CGGCACTATC CGCCATTTCA GAAACCTTGA ACCTTGTCGT TGATTACGGT TTCCTATGGT GGTTAGCGGT ACCAATCCAC TGGTTATTGA TGTTCTATCA ATCATTTGTG GGTAACTGGG GTGTAGCAAT TATCCTGATC ACCTTAACCG TTCGTGGTTT ACTGTTCCCG CTAACAAAAG CGCAGTACAC CTCAATGGCT AAGATGCGCA ATCTGCAACC TAAACTTGCC GACTTAAAAG AACGTTTTGG TGATGACCGT CAGAAGATGG GTCAAGCTAT GATGGAACTG TATAAGAAAG AAAAAGTTAA CCCCATGGGT GGCTGTTTAC CTATTATTTT ACAGATGCCA ATCTTCATTG CCTTGTACTG GGTATTGCTA GAAAGTTTCG AACTACGTCA CGCTCCCTTT ATGTTATGGA TCCACGATTT ATCGGTACAA GATCCTTACT ACATACTGCC GTTGCTGATG GGCGTATCTA TGTTCATCAT GCAGAAAATG CAACCTATCG CACCGACGAT GGATCCAATG CAAGTGAAGA TGATGCAATG GATGCCAGTA ATCTTTACCG TATTCTTCCT GTGGTTCCCA TCAGGTCTAG TACTATACTG GTTAGTAGGT AACATTGTTG CCATCATCCA GCAGAAGATT ATTTATGCAG GTCTTGAGAA AAAAGGCTTA AAATAA
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Protein sequence | MESQRNILLI GLLFVSFLLW QQWQADKAPK PVATESSLVA NVASTHSADV PEADTGVPAA VAASKNLITV KTDQLDVQIN PVGGDIVFAA LVSHKMEQGK EQPFVLLEQT KDYTYIAQSG LIGRDGIDSS ANGRAAFTTS ATEFTLAEGQ DTLEVPLTYV ADNGVTYTKV FVFHRGKFNV DVDYKINNTS AAPLQVQMYG QIKQTIKPSE SSMMMPTYRG GAFSTNDVRY EKYNFDDMAK SNLNQATLGG WAAMLQHYFV SAWVPPATDS NTIFSSVSAG GLANIGFRGA VYDIAPGASQ EISSQFYVGP KDQAALSAIS ETLNLVVDYG FLWWLAVPIH WLLMFYQSFV GNWGVAIILI TLTVRGLLFP LTKAQYTSMA KMRNLQPKLA DLKERFGDDR QKMGQAMMEL YKKEKVNPMG GCLPIILQMP IFIALYWVLL ESFELRHAPF MLWIHDLSVQ DPYYILPLLM GVSMFIMQKM QPIAPTMDPM QVKMMQWMPV IFTVFFLWFP SGLVLYWLVG NIVAIIQQKI IYAGLEKKGL K
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