| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3902 |
|---|
| Symbol | tdh |
|---|
| ID | 5081332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 4527869 |
|---|
| End bp | 4528894 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640501114 |
|---|
| Product | L-threonine 3-dehydrogenase |
|---|
| Protein accession | YP_001185407 |
|---|
| Protein GI | 146294983 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase
[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00646337 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAC TAAGCAAGTT AAAAGCCGAA AAAGGCATTT GGTTAGTCGA TGCGCCTAAA
CCTGAAATGG GCCACAACGA TCTGCTGATC AAGATTAAAA AGACCGCCAT TTGTGGCACC
GACATGCACA TCTACAACTG GGACGAATGG TCACAAAAAA CCATTCCTGT GCCTATGGTG
GTCGGCCACG AATATGTGGG TGAAGTGGTT GATATCGGCC AAGAAGTCCG TGGTTTTAAA
ATCGGTGACC GTGTTTCTGG CGAAGGCCAT ATCACCTGTG GCCACTGCCG TAATTGCCGC
GCGGGTCGCA CCCATCTATG TCGTAATACC TCAGGTGTGG GTGTAAACCG CGAAGGTTCA
TTTGCCGAAT ACTTAGTTAT CCCCGCCTTT AACGCCTTTA AAATCCCTGA TGATATCAGC
GATGATTTAG CCTCAATCTT TGACCCATTT GGTAACGCAG TACACACGGC ACTGTCATTC
GATTTAGTCG GCGAAGACGT GTTGATCACA GGCGCAGGTC CTATCGGTAT CATGGCAGCA
GCAGTATGTC GTCATGTAGG TGCTCGCCAT GTGGTGATTA CCGACGTTAA CGAATACCGC
TTAGAGCTGG CCCGAAAAAT GGGGGCGACT CGCGCTGTAA ACGTATCAAA AGAAAATCTA
AAAGACGTGA TGAAAGAACT CGGCATGACC GAAGGTTTTG ATGTTGGATT AGAAATGTCT
GGCGTACCAT CGGCCTTCCA CGCCATGTTA GATACCATGA ACCACGGCGG TAAAGTCGCT
ATGCTCGGTA TTCCGGGTGG CGAAATGGCC ATTGATTGGA GCAAAGTGAT CTTCAAAGGT
TTGGTCATTA AAGGCATTTA CGGCCGTGAA ATGTTCGAAA CTTGGTACAA GATGGCAAGC
CTTATCCAAT CTGGCTTAGA CATTTCCCCA ATCATCACTC ACCACTACAA GATTGATGAT
TTCCAAAAAG GCTTTGACGC TATGGGCTCG GGTCAATCGG GTAAAGTCAT CCTCAGCTGG
GATTAA
|
|---|
| Protein sequence | MKALSKLKAE KGIWLVDAPK PEMGHNDLLI KIKKTAICGT DMHIYNWDEW SQKTIPVPMV
VGHEYVGEVV DIGQEVRGFK IGDRVSGEGH ITCGHCRNCR AGRTHLCRNT SGVGVNREGS
FAEYLVIPAF NAFKIPDDIS DDLASIFDPF GNAVHTALSF DLVGEDVLIT GAGPIGIMAA
AVCRHVGARH VVITDVNEYR LELARKMGAT RAVNVSKENL KDVMKELGMT EGFDVGLEMS
GVPSAFHAML DTMNHGGKVA MLGIPGGEMA IDWSKVIFKG LVIKGIYGRE MFETWYKMAS
LIQSGLDISP IITHHYKIDD FQKGFDAMGS GQSGKVILSW D
|
|---|
| |