Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_3832 |
Symbol | |
ID | 5081166 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 4447890 |
End bp | 4449014 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640501044 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001185337 |
Protein GI | 146294913 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGAAAAAAC CGTTGGTGTT AATAGTTGGA AGTACCTTTA TTCTATTAAT TGGGATAGTA GTTTGGGGTC TTAATTTTTC CTCAAAAACA CAAGATGCTG ACAGTAAATT AACGGCAGAG ATGATGGCTA AGTCAACGTC TAAAAAGTCA CAACTACCTC CTGCGGTTAG CCTTTTTAAA GTCACAAATC AAACGTTTAG CCAGTATATT GTATTGACCG GAACAATTGA GCCAACAAAA GTGGCGAGTT TGGCCTCTCC GGCAGAAGGT CCGATTCTTA ATCTTGTGGT GCGTGAGGGG GATACTGTTA ATTTAGGACA AGAGATTTTA CGCATTGGTC GAACTCATGC GGCTGATTCT CTTCAAACAT CTGCCGCTGA AGAAGTACGT AAACAAGTAT TAAATTTAAA GCGTATTGAA ACTTTAGTTA AGCAGCATAC TTTACCTGAG GAGCAGTTAG ACGAAGCACT ATCATCATTA GAAAAAGCGA AGGCGGCATT GAGCCAAGCA AAACAAGCCC TTAATGATTA CATAGTGACC GTGCCTTGGT CAGGGATTAT ATCTAAAGTC TTGGTTTCAG ATGGTCATTT CGTTATACCC CGTAGTCCCT TGGTTGAAAT GTATGATCCA GATAGTTTGG TATTACGATT TAGCGTCGCA GAAGCCCAAG CTTTAGTTCT TAAGAAGGGG CATAAAGTTA AAGCGACTTT TGATGGGCTT GCTGGGCAGG AATTCGAATT AGAGATTATT CGAGCTTATC CCGATTTAGA TAGAAAGTTA CGTACGCGTC TTTTTGAGGC GTCGCTACCT GCAAATGAGT TTATTCCTGG TATGTTTGCG CGGATCCGAG TCGTACAGCA GGAGCACAAA AATACTCTTG TCATACCGAT TGATACGCTT CAAGTGCAAG GAAAAGACAA AAGTGTGTTT GTAGTGACAG ATAATATTGT CACTCGACGA TTAGTCGAAA CCGGTTTAGA GCAGGATGAT CAAATTGAAG TGTTATCGGG ACTGAAAGCG GGTGAGATAA TCGTTCTAAC TGGCATTGAA AGGGTGAAAA ATGGCTCCGC AGTGAGAGTA TTGGAGCAAC CCGCTGAAAA CAATAGCACG GGTGTTGAAA AATGA
|
Protein sequence | MKKPLVLIVG STFILLIGIV VWGLNFSSKT QDADSKLTAE MMAKSTSKKS QLPPAVSLFK VTNQTFSQYI VLTGTIEPTK VASLASPAEG PILNLVVREG DTVNLGQEIL RIGRTHAADS LQTSAAEEVR KQVLNLKRIE TLVKQHTLPE EQLDEALSSL EKAKAALSQA KQALNDYIVT VPWSGIISKV LVSDGHFVIP RSPLVEMYDP DSLVLRFSVA EAQALVLKKG HKVKATFDGL AGQEFELEII RAYPDLDRKL RTRLFEASLP ANEFIPGMFA RIRVVQQEHK NTLVIPIDTL QVQGKDKSVF VVTDNIVTRR LVETGLEQDD QIEVLSGLKA GEIIVLTGIE RVKNGSAVRV LEQPAENNST GVEK
|
| |