| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3766 |
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| Symbol | rpoB |
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| ID | 5081046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 4371070 |
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| End bp | 4375101 |
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| Gene Length | 4032 bp |
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| Protein Length | 1343 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640500975 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001185272 |
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| Protein GI | 146294848 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0265779 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ACTTTGGTAA GCGTCCACAG
GTGTTGGATA TTCCTTACCT TTTGTCTATT CAGTTAGACT CTTTTAAGAA GTTCACCGAT
CAAGATCCTA CCGGTGAGCG CGGTCTTGAA GCCGCCTTCC GTAGCGTTTT TCCCATCAAG
AGCTTTTCTG GTAATTCAGA ACTGCAATAC GTCAGCTATA AGCTTGGCGA GCCTGTTTTT
GATGTGAAAG AGTGTCAGAT CCGCGGTGTT ACGTATTCAG CACCACTACG CGTTAAATTA
CGCATGGTGT TGTATGACCG TGAAGCAGCG GCAGGCACTG TAAAAGATAT TAAAGAGCAA
GAAGTCTACA TGGGCGATAT CCCATTGATG ACGGATAACG GTACCTTTGT TATCAACGGT
ACTGAGCGTG TAATCGTATC TCAATTACAC CGTAGCCCTG GCGTGTTCTT CGATCATGAC
CGTGGTAAAA CCCACTCATC GGGTAAGGTG CTGTATAACG CACGTATTAT TCCTTACCGT
GGTTCATGGC TTGACTTTGA ATTCGATCCT AAAGATGCAC TTTTCGTACG TATTGACCGT
CGCCGTAAAT TACCAGCGAC CATCATTCTG CGTGCATTAG AATACTCTAC TCAAGAGATC
CTCGACCTGT TCTTCGAACG TGTTGAGTTC AAGATCAAGA AAGATACGTT AGTCATGGCG
TTAGTTCCTG AGCGTCTGCG TGGCGAAACT GCCAGCTATG ACATCAAGGA TGCTGAAGGT
TCTGTGCTGG TTGAAGCGGG CCGTCGTATT ACTGCGCGCC ATATTCGCCA GTTAGAAAAG
ACTAATACCA CTGAACTCGA AGTGCCAGTT GAATATATCG TGGGCAAATA TGCTGCTCAA
GATTATATCG ATCCGGACAC GGGTGAAGTT TTAGTATCTG CAAACAGTGA AATCAGCTTA
GAAGACTTAG CGAAATTATC ACTGGCTGGC ATTAAAGATA TCAGCACGTT GTATATCAAC
GAGCTAGATC ATGGTGCTTA TATTTCAGAT ACGCTGCGTA TCGATTCAAC CACTAACCGC
TTAGAAGCGC TGGTTGAAAT CTATCGTATG ATGCGTCCTG GCGAGCCACC AACCAAAGAT
GCGGCAGAAG CACTATTCCA GAACTTGTTC TTCAGTGAAG AACGCTATGA CCTGTCTAAA
GTCGGTCGTA TGAAGTTCAA CCGTCGTCTG AGCATCCCCG ATGACGAAGG TAGCGGTGTA
TTGTCTAAAG AAGACATCGT CGCGGTAATG AAGAACATCA TTCATATCCG TAACGGTTTC
GACGAAGTCG ATGACATCGA TCACTTAGGT AACCGTCGTA TTCGTAGCGT CGGTGAAATG
GCTGAAAACC AATTCCGTGT TGGTTTAGTC CGTGTTGAGC GCGCTGTGCG TGAACGTCTA
TCTTTAGGCG ATCTGAACGA GCTGATGCCA CAAGACTTAA TCAACGCTAA GCCAATTTCT
GCTGCAGTGA AAGAGTTCTT CGGTTCTTCA CAGCTGTCAC AATTCATGGA CCAAAACAAC
CCGCTGTCAG AAGTCACGCA TAAGCGTCGT ATTTCTGCTC TTGGCCCTGG TGGTTTGACT
CGTGAACGTG CAGGCTTTGA AGTCCGTGAC GTACATCCAA CGCATTATGG TCGTTTATGT
CCAATTGAGA CCCCTGAAGG TCCAAACATT GGTCTAATCA ACTCATTAGC AAGTTTTGCC
CGTACTAACT CATACGGCTT CTTAGAAACG CCATACCGCA AGGTGATTGA TGGCGTGATT
ACTGACGAAG TGGAATACTT GTCAGCGATT GAAGAAGGTC GTTATGTCAT TGCACAGGCA
AACATCGAAG TTGATGCAAA TGGCCGCATG GTTGAAGAGC AGATCGCCTG TCGTCATAAA
GGTGAATCTA CCTTTATGCG CGCATCTGAT ATTCAATACA TGGACGTATC GCCACAACAG
ATTATTTCTG TTGCTGCATC ACTGATCCCG TTCTTAGAAC ACGACGACGC TAACCGTGCA
TTGATGGGTG CGAACATGCA ACGTCAAGCC GTACCCACAC TGCGCTCTGA AAAGCCATTA
GTCGGTACTG GTATTGAACG TACGCTAGCT GTTGATTCTG GTGTTGTAGT TGTTGCTAAG
CGTGGTGGTT ATATCGACTA CGTTGATGCG AGCCGTATCG TTGTTAAAGT CAATGAAGAT
GAGCTACGTC CAGGCGAAGC GGGTATCGAC ATTTATAACC TGACTAAATA CACCCGGTCT
AACCAAAATA CTTGTATCAA CCAGCGCCCT TGTTGTGCCG TTGGTGAGCC AGTCGTTCGT
GGTGACGTGT TAGCAGACGG TCCGTCTACT GACTTAGGTG ACTTAGCTCT TGGCCAGAAC
ATGCGCATCG CGTTCATGCC TTGGAACGGT TACAACTTCG AAGACTCGAT CTTAATTTCT
GAGCGCGTAG CACAGGAAGA CCGTTTCACC ACTATCCACA TCCAAGAGCT GTCTTGTATT
GCTCGTGATA CCAAACTGGG TAGCGAAGAA ATCACCGCTG ATATTCCAAA CGTAGGTGAA
TCTGCTCTGT CGAAACTCGA CGAATCAGGT ATCGTTTATA TTGGTGCAGA AGTGAAGGGT
GGCGATATTC TGGTCGGTAA AGTGACGCCA AAAGGCGAAA CTCAGCTAAC ACCAGAAGAG
AAGTTACTCC GTGCTATCTT CGGTGAGAAA GCGTCTGATG TGAAAGACAG CTCACTGCGT
GTACCTAACT CTGTTAAGGG CACTATCATC GACGTTCAGG TATTTACCCG TGACGGCGTT
GAAAAAGATA AACGTGCAGT TGAAATCGAA GAGATGCACA TCGCTCAAGC ACGTAAAGAC
TTAAGCGAAG AGTTCAAGAT CCTTGAAGAA GGTGTATTGA GCCGTGCTCG TAACCTATTG
TTAGGTGCAG GTTTCACAGA AACACAAATC GCAGCGATGC CACGTAAGGA TGTATTGGTT
CAAGTTATTG ACGATGAAGC AAAACAAACT GAACTTGAGC AATTAGCTGA GCAGCATGAA
GAGCTGAAAG CAGACTTCGA TAAGAAGTTT GAAATTAAAC GTCGCAAGAT CACCCAAGGT
GATGACTTGG CGCCAGGCGT ACTGAAGATC GTTAAGGTTT ACTTAGCGGT TAAGCGTACT
ATCCAACCTG GTGACAAGAT GGCGGGTCGT CATGGTAACA AAGGTGTTAT CTCTAAGATT
TGCCCAATCG AAGACATGCC ATATGACGAA CAAGGTAATC CAGTAGACAT CGTATTGAAC
CCACTAGGTG TTCCGTCACG GATGAACATT GGTCAGGTAC TTGAAGTCCA TATGGGCGCC
GCCGCTAAAG GTATTGGTAA CAAGATCACT GCAATGCTTG AAGAACAGCG CGAGCTGGCT
GAAGTACGCG GTTACATCAA ACAAGTGTAT GAGTTAGGTG ACGAAGTGCA GCAGCGCGTC
GATATCGATT CATTCACCGA TGATGAAGTG ATGCGTCTTG CCCAAAACTT GAAGGGTGGT
ATCCCGATTG CGACTCCTGC ATTCGACGGT GCTAAAGAGA AAGAGATCAA GCAGATGCTT
GAGCTTGCAG GCTTGCCAAC CTCTGGTCAG CTGAAGTTGT ATGATGGTCG TACCGGTAAC
GAATTTGAGC GTCAAGTAAC CGTTGGTTAC ATGTACATGC TCAAACTGAA CCACTTAGTT
GATGACAAGA TGCACGCCCG TTCTACCGGT TCGTACAGCT TAGTGACTCA ACAACCACTG
GGCGGTAAAG CTCAGTTCGG TGGTCAGCGT TTCGGTGAGA TGGAAGTGTG GGCACTAGAA
GCATACGGTG CCGCTTATAC GCTTCAAGAA ATGCTCACTG TGAAATCGGA TGACGTTAAC
GGTCGTACTC AGATGTATAA GAACATCGTC GACGGTAACC ATCAGATGCA ACCTGGCATG
CCAGAGTCCT TCAACGTGTT ACTGAAGGAG ATCCGTTCAC TCGGTATTAA TATCGAGTTG
GATCAGGAAT AA
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| Protein sequence | MVYSYSEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFKKFTD QDPTGERGLE AAFRSVFPIK
SFSGNSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLYDREAA AGTVKDIKEQ
EVYMGDIPLM TDNGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDALFVRIDR RRKLPATIIL RALEYSTQEI LDLFFERVEF KIKKDTLVMA
LVPERLRGET ASYDIKDAEG SVLVEAGRRI TARHIRQLEK TNTTELEVPV EYIVGKYAAQ
DYIDPDTGEV LVSANSEISL EDLAKLSLAG IKDISTLYIN ELDHGAYISD TLRIDSTTNR
LEALVEIYRM MRPGEPPTKD AAEALFQNLF FSEERYDLSK VGRMKFNRRL SIPDDEGSGV
LSKEDIVAVM KNIIHIRNGF DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL
SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT
RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLASFA RTNSYGFLET PYRKVIDGVI
TDEVEYLSAI EEGRYVIAQA NIEVDANGRM VEEQIACRHK GESTFMRASD IQYMDVSPQQ
IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLRSEKPL VGTGIERTLA VDSGVVVVAK
RGGYIDYVDA SRIVVKVNED ELRPGEAGID IYNLTKYTRS NQNTCINQRP CCAVGEPVVR
GDVLADGPST DLGDLALGQN MRIAFMPWNG YNFEDSILIS ERVAQEDRFT TIHIQELSCI
ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE
KLLRAIFGEK ASDVKDSSLR VPNSVKGTII DVQVFTRDGV EKDKRAVEIE EMHIAQARKD
LSEEFKILEE GVLSRARNLL LGAGFTETQI AAMPRKDVLV QVIDDEAKQT ELEQLAEQHE
ELKADFDKKF EIKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI
CPIEDMPYDE QGNPVDIVLN PLGVPSRMNI GQVLEVHMGA AAKGIGNKIT AMLEEQRELA
EVRGYIKQVY ELGDEVQQRV DIDSFTDDEV MRLAQNLKGG IPIATPAFDG AKEKEIKQML
ELAGLPTSGQ LKLYDGRTGN EFERQVTVGY MYMLKLNHLV DDKMHARSTG SYSLVTQQPL
GGKAQFGGQR FGEMEVWALE AYGAAYTLQE MLTVKSDDVN GRTQMYKNIV DGNHQMQPGM
PESFNVLLKE IRSLGINIEL DQE
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