| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3679 |
|---|
| Symbol | |
|---|
| ID | 5079012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 4286108 |
|---|
| End bp | 4288270 |
|---|
| Gene Length | 2163 bp |
|---|
| Protein Length | 720 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640500885 |
|---|
| Product | ornithine decarboxylase |
|---|
| Protein accession | YP_001185186 |
|---|
| Protein GI | 146294762 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAT TAAAAGTAGC CGCTAGCTTA TCTGTCAGAT CTTGTTTCGA TATAGACAGA
GAAGTCGTCA ACGTATTAAC CACTGATTTT TGCGATGTAG GTGCGGCTGT TGTCTCTGTT
GATGATGTTA GAAATGGTAT TGTTGAAAAG ATTAAAAATA CCGGATTAAA ACTACCGATT
TTCGTTTCAG TTTGCTGTGA AGAAACCTTC CCAGATGATG TATGCTCATC AATTACTGGG
GTATTTGAAC TCTGCGGAGA TAACACTGAC TTCTACGGAA AACAGGTGGA AACTGCGGTT
AATAAATATG AGCAAGCTTT ATTACCCCCT TTCTTTGGGA CACTCAAAAA ATACGTCGAA
ATGGGCAACT CCACCTTTGC TTGCCCTGGC CATCAAGGTG GACAATTCTT CCGTAAACAC
CCTGTAGGCC GTCAGTTCTT CGACTTTTTT GGCGAAACTA TTTTCCGTGC TGATATGTGT
AATGCCGACG TTAAATTAGG CGACCTACTC ATCCATGAAG GTGCACCGCT GGATGCACAA
AAATATGCGG CTAAAGTGTT TAATGCCGAT AAAACTTATT TCGTACTCAA TGGGACTTCT
TCTTCCAATA AAGTGGCCAC TAATGCGTTA TTAGCAAAAG GGGATTTAGT ACTCTTTGAT
CGCAATAACC ATAAATCGAA CCACCATGGC GCGCTAATTC AAGCGGGTGC AACACCGATT
TATTTAGAAA CAGCACGTAA CCCCTTCGGT TTTATTGGTG GTATAGATGC CCACTGTTTC
CAAGAATCTT ATTTAAGAGA ACAAATTCGT GAAGTTGCCC CAGAACGCGC CGATGAAAAA
CGCCCATTCC GGTTAGCGAT TATCCAACTG GGTACCTACG ACGGTACTAT CTATAATGCT
CGCCAAGTGG TTGATCGTAT TGGTCATCTA TGTGATTACA TTCTGTTTGA CTCAGCTTGG
GTGGGCTATG AACAGTTTAT TCCCATGATG AATGACTGTT CACCACTACT GCTCGAACTG
ACGCCAGAAG ATCCTGGTAT TATCGTGACG CAGTCTGTAC ACAAACAACA AGCAGGCTTC
TCACAGACCT CACAAATCCA TAAAAAAGAT AAGCATATCA AAGGCCAAGC GCGATACTGT
AACCATAAGC GTTTCAATAA CGCCTTTATG ATGCATGCCT CAACCAGCCC CTTCTATCCT
CTGTTTGCGG CGCTGGATGT GAACGCAAAA ATGCATGAAG GAGCAAGCGG TCGTTATCTG
TGGCGCGAAG CGGTAAAAGC GGGTATCGAA GCACGTAAGC TATTGCTTAA AAAGTGTAAA
TATATCAAAC CATTCGTACC AACCATGATC GACGGTCGCC TATGGCAAGA ATATGAAACC
GAGCAAATGG CCGACGATTT ACGCTTCTTT GAATTCGAAC CCGGTCAAAA ATGGCACTCC
TTCGACGGTT ATGAAAAGGG CCAATATTTC GTTGATCCTT GTAAATTCCT GTTAACAACT
CCGGGTATTG ATGCCGAAAC GGGTAAATAT ACTGAGTTTG GAATTCCCGC GACTATTTTG
GCTAACTTTT TACGGGAAAA TAATATTATT CCAGAGAAGT GCGACTTAAA TTCGATTTTA
TTCCTGATGA CACCTGCAGA AGATATGGCA AAAATGCAAC ACTTAGTGTC GCAAATATCC
CGCTTCGAAA AATTAGTTGA TGAAGATGCA CCATTATCCG AAGTCTTACC TAATGTTTAT
AACGCCAATA AAGCCCGTTA CAAAGATTAT ACTATCCGCC AACTCTGCCA AGAAATGCAT
AATCTTTATG TCAGCCATGA TGTAAAACAA TTGCAAAAAG AAATGTTCAG AAAAGCACAT
TTCCCAACTA AGGTAATGGA CCCTCAAGAA GCTAATCTTG AATTTATTCG CGGTAAAGTA
GAACTAGTCC CACTCTCTCA AATTGAAGGT CGTATCGCTG CCGAAGGTGC GCTGCCATAT
CCACCAGGAG TGCTATGTAT GGTTCCAGGT GAAATATGGG GAGGTGCTGT ACAGCGTTAT
TTCTTAGCCC TTGAAGAAGG TATCAACTTA TTACCCGGAT TCTCGCCAGA GTTGCAAGGT
GTTTATCTCG AAAACACCGC CGAAGGCAAA ATCCAAGCAT TAGGTTATGT ATTAGCTAAA
TAA
|
|---|
| Protein sequence | MKSLKVAASL SVRSCFDIDR EVVNVLTTDF CDVGAAVVSV DDVRNGIVEK IKNTGLKLPI
FVSVCCEETF PDDVCSSITG VFELCGDNTD FYGKQVETAV NKYEQALLPP FFGTLKKYVE
MGNSTFACPG HQGGQFFRKH PVGRQFFDFF GETIFRADMC NADVKLGDLL IHEGAPLDAQ
KYAAKVFNAD KTYFVLNGTS SSNKVATNAL LAKGDLVLFD RNNHKSNHHG ALIQAGATPI
YLETARNPFG FIGGIDAHCF QESYLREQIR EVAPERADEK RPFRLAIIQL GTYDGTIYNA
RQVVDRIGHL CDYILFDSAW VGYEQFIPMM NDCSPLLLEL TPEDPGIIVT QSVHKQQAGF
SQTSQIHKKD KHIKGQARYC NHKRFNNAFM MHASTSPFYP LFAALDVNAK MHEGASGRYL
WREAVKAGIE ARKLLLKKCK YIKPFVPTMI DGRLWQEYET EQMADDLRFF EFEPGQKWHS
FDGYEKGQYF VDPCKFLLTT PGIDAETGKY TEFGIPATIL ANFLRENNII PEKCDLNSIL
FLMTPAEDMA KMQHLVSQIS RFEKLVDEDA PLSEVLPNVY NANKARYKDY TIRQLCQEMH
NLYVSHDVKQ LQKEMFRKAH FPTKVMDPQE ANLEFIRGKV ELVPLSQIEG RIAAEGALPY
PPGVLCMVPG EIWGGAVQRY FLALEEGINL LPGFSPELQG VYLENTAEGK IQALGYVLAK
|
|---|
| |