| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3645 |
|---|
| Symbol | |
|---|
| ID | 5078935 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 4248305 |
|---|
| End bp | 4249432 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640500851 |
|---|
| Product | methylcitrate synthase |
|---|
| Protein accession | YP_001185152 |
|---|
| Protein GI | 146294728 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0372] Citrate synthase |
|---|
| TIGRFAM ID | [TIGR01800] 2-methylcitrate synthase/citrate synthase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAAG CTAAAAAACT AAGCGGTGCA GGATTACGTG GCCAGAGCGC AGGCGAAACT
GCATTGAGCA CAGTGGGCGT ATCAGGCTCG GGCCTCACAT ACCGCGGTTA TGATGTGAAA
GATCTCGGTG AAAATGCCAC CTTCGAAGAA GTCGCCTACC TTATTCTTTA CGGCGAGCTG
CCCACTCAAG CACAGCTTGA TGCCTACAAA ACCAAACTCA AAGGCCTTCG CGGTCTACCG
CAAGCATTAA AAGAAGTATT AGAGCGCATT CCTGCCGACA CTCATCCTAT GGATGTGATG
CGTACTGGCT GCTCTATGCT AGGCAACTTA GAAGCCGAGC ACAGCTTTGC CGAACAGAGT
GAAATTACCG ACCGTTTACT CGCCGCATTC CCATCGATCA TCTGTTACTG GTATCGCTTT
AGCCACGATG GCGTGCGTAT TGATACTGAA ACCGATGACG ATCAAATTGG CGCACACTTC
CTGCATTTGT TACATGGCAA AGCGCCGTCG GCACTGCATG CTAAAGTGAT GGACGTATCG
TTAATTCTTT ATGCAGAACA TGAATTTAAC GCATCAACCT TTACCGCTCG CGTATGTGCT
TCCACCTTGT CAGATATGCA TTCATGCGTC ACTGGGGCGA TTGGTTCACT GCGCGGCCCG
CTGCATGGCG GCGCGAACGA AGCGGCGATG GAACTTATTC AAGACATGAA AGATGAAGCC
GATGCGCGCG ACATCTTAAT GGGTAAACTC GAACGTAAAG ATAAGATCAT GGGCTTCGGT
CACGCGATTT ACCGCGACAG CGATCCACGT AACGCCATCA TCAAAGAATG GTCAGAAAAA
CTGGCGGCTG CCAACGGTGA CGACCGTCTA TACCGCGTAT CAGTTGCCTG TGAAGCCCTG
ATGTGGGAAC AGAAAAAACT CTTCTGTAAT GCAGATTTTT TCCACGCCAG CGCTTACCAC
TACATGGATA TTCCGACTAA GTTGTTTACG CCAATCTTCG TGTGTTCACG CGTCACAGGC
TGGGCGGCGC ACGTGATGGA GCAACGCTCT AACAACCGCA TCATCCGCCC GAGTGCCGAT
TATGTGGGCG TTGCACCGCG CAAAGTGGTA CCGATTGCCA ACCGTTAA
|
|---|
| Protein sequence | MSEAKKLSGA GLRGQSAGET ALSTVGVSGS GLTYRGYDVK DLGENATFEE VAYLILYGEL
PTQAQLDAYK TKLKGLRGLP QALKEVLERI PADTHPMDVM RTGCSMLGNL EAEHSFAEQS
EITDRLLAAF PSIICYWYRF SHDGVRIDTE TDDDQIGAHF LHLLHGKAPS ALHAKVMDVS
LILYAEHEFN ASTFTARVCA STLSDMHSCV TGAIGSLRGP LHGGANEAAM ELIQDMKDEA
DARDILMGKL ERKDKIMGFG HAIYRDSDPR NAIIKEWSEK LAAANGDDRL YRVSVACEAL
MWEQKKLFCN ADFFHASAYH YMDIPTKLFT PIFVCSRVTG WAAHVMEQRS NNRIIRPSAD
YVGVAPRKVV PIANR
|
|---|
| |