| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3582 |
|---|
| Symbol | dapF |
|---|
| ID | 5078818 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 4159715 |
|---|
| End bp | 4160542 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640500784 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_001185089 |
|---|
| Protein GI | 146294665 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.653633 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATCCAAT TCACTAAGAT GCACGGACTG GGCAACGATT TTATGGTGGT CGATGGTGTC
ACGCAGAACG TGTTCTTTTC GCCTGAGCAG ATCCGCCGTT TAGCCGACCG TAACTTTGGT
ATAGGTTTTG ACCAACTACT CTTGGTCGAG CCGCCCTATG ATCCGGATTT AGATTTTCAC
TATCGCATCT TTAATGCCGA TGGCAGTGAA GTTGAGCAGT GTGGTAATGG TGCTCGCTGT
TTTGCCCGTT TTGTGCGCAA TAAAGGACTA ACAAATAAGA ACAAAATTCG TGTTAGTACT
TCATCTGGCA AAATGACATT GCGTTTGGAG CGCGATGGAA CTGTGACGGT GAATATGGGT
GTTCCGATAC TTGAACCAAG CCTTATTCCC TTTAAAGCTA AAAAGCCTGA AAAAACATAT
TTACTGCAAA CTGCGCAGCA AACTTTTTTA TGTGGCGCCG CTTCTATGGG CAATCCCCAT
TGCGTGCTTG ATGTGGAAGA TGTGGCCAGT GCCGCCGTTG CCGAGATTGG TGCTTTGCTG
ACAAAACATG AACGCTTTCC GCGTGGGGTG AATGTCGGAT TTATGCAGGT GATAAACTCT
GGCCATATTA AACTGCGTGT TTATGAGCGC GGAGCTGCTG AAACCTTAGC TTGTGGCACA
GGTGCCTGCG CTGCAGTGGT TGTGGGTCAA ATACAAGGTA AACTTGATCA GCAAGTCCGT
GTGGATTTAC CGGGAGGCAC GTTAACCATC AACTGGGAAG GCGAGGGTAA ACCCCTGTGG
ATGACGGGGC CAGCACAACA TGTTTATGAT GGACAAATTC AGCTATGA
|
|---|
| Protein sequence | MIQFTKMHGL GNDFMVVDGV TQNVFFSPEQ IRRLADRNFG IGFDQLLLVE PPYDPDLDFH
YRIFNADGSE VEQCGNGARC FARFVRNKGL TNKNKIRVST SSGKMTLRLE RDGTVTVNMG
VPILEPSLIP FKAKKPEKTY LLQTAQQTFL CGAASMGNPH CVLDVEDVAS AAVAEIGALL
TKHERFPRGV NVGFMQVINS GHIKLRVYER GAAETLACGT GACAAVVVGQ IQGKLDQQVR
VDLPGGTLTI NWEGEGKPLW MTGPAQHVYD GQIQL
|
|---|
| |