Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_3476 |
Symbol | fliF |
ID | 5080511 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 4039704 |
End bp | 4041380 |
Gene Length | 1677 bp |
Protein Length | 558 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640500675 |
Product | flagellar MS-ring protein |
Protein accession | YP_001184985 |
Protein GI | 146294561 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTACCA CTTTTGTTCA ATCAGGTCAG GATATTACGG GAACTGAGCG TTCGTCAGGC CTCATTGCTG ATATGACCCA GAAATGGCAT AAGTTTAACC GTGGAGATCG TCAGGTCATT GCCTTAGCGC TACTCGCTGT GGTTGTTGCC AGCGTAATAG TGTTAATGCT CTGGACGGCA ACGGCGGGGT ATCGACCTTT ATACGGTAGC CAAGAAAATG TCGATACCTC TCAAGTGCTT AATGTATTAG AAGCTGAAGG GATTCATTAC CGTCTTGAGG CAAATACAGG GGCAGTGCTG GTGGCTGAGG AGCAAGTCGG TAATGCACGT ATGCTCTTGG CGGCGAAAGG CGTGAAAGCG AAAGTACCTT CAGGTATGGA GGCGCTCGAT AATAATGCGC TTGGTACGAG CCAATTTATG GAGCAAGCCA AATATCGCCA TAGTTTAGAA GGTGAGTTAG CCCGCACTAT TATGTCATTA AAGTTAGTGA GAGCGGCCAG AGTTCATTTA GCCATACCTA AACAGAGTCT ATTTATTCGT CAGGAGCCGG AATTACCCAC GGCCTCTGTG ATGTTGCAGC TTGACCCCAA TACACGTTTA TCTGAATCAC AGGTTGAGGC CATTGTTAAC TTAGTGGCTG GCAGTGTAAC TGGACTCACC GCAAGTAATA TTAAAGTCGT TGATCAAGAT GGTCGGTATT TAAGTGAAAA CATTTCGGGT AATCAAGATC TTAGCCAGTC TAGGAATAAG CAATTACAAT ACACTCGTGA GTTGGAACAT AGTTTAGTCG CCAATGCTGC CTCTATGCTG GAGCCTGTGC TTGGACACGA TAATTTCCAA GTACGAGTGA CGGCAAAAGT TAACTTCAAT CAGGTTGAAG AAACCAAGGA GTCACTCGAT CCACAAAATG TCGTAACCCA AGAGCGCACC AGTATTGATG ACTCGAGTAA TAGTATTGCG GCAGGGATCC CTGGTGCTTT AAGCAATAAG CCTCCTCAGG TCGGGACCGC GGCAACGGAT GACAAAACAC GTAATCTGAA GCAAGAGGAA AGTCGTCAAT ATGATGTTGG ACGTTCTGTG CGTCATGTGC GTTACCAACA AATGCAGCTT GAAAACCTCT CTGTCTCAGT ACTCATCAAT AGCGCGGCGG GTCAAGGGGT ATTTAATAAT GAGGCTCAGC TTGTTAAGTT TGGCAACATG GTGAAAGATG CCATTGGTTT TTCAGCGGCA AGAGGTGACA GTTTTACCAT CAATGCTTTT GAATTTACGC CGACAGTGGT GGCTGAAATA CCGACTTCTC CTTGGTGGCA ATCCGAAAAT TATCAATCCT ATTTACGCTA TATCATAGGT GGGATCCTCG GTTTTGGGCT TATTTTGTTT GTCTTACGTC CTTTGGTTAA ACACTTAACT CGTACGGCAC AAATCACTGC CCCTAGTATA GAACCAGCAG CATTAAGTGC GGCATCAGCC AATGCCCTTG ATGGGCCAAC GGTTGATTAT GCACCTAATC AAGCCCATCA ATTACCGAGT GCTGATTGGC TAGGCAGCCA AGGTTTGCCT GAACCAGGAT CACCTTTAAC GGTGAAGATG GAACATTTAG CATTATTGGC AAATAAAGAA CCCGCACGTG TTGCAGAAGT GATAGCTCAT TGGATAGGCG ATAAAGACGG TGAATAA
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Protein sequence | MSTTFVQSGQ DITGTERSSG LIADMTQKWH KFNRGDRQVI ALALLAVVVA SVIVLMLWTA TAGYRPLYGS QENVDTSQVL NVLEAEGIHY RLEANTGAVL VAEEQVGNAR MLLAAKGVKA KVPSGMEALD NNALGTSQFM EQAKYRHSLE GELARTIMSL KLVRAARVHL AIPKQSLFIR QEPELPTASV MLQLDPNTRL SESQVEAIVN LVAGSVTGLT ASNIKVVDQD GRYLSENISG NQDLSQSRNK QLQYTRELEH SLVANAASML EPVLGHDNFQ VRVTAKVNFN QVEETKESLD PQNVVTQERT SIDDSSNSIA AGIPGALSNK PPQVGTAATD DKTRNLKQEE SRQYDVGRSV RHVRYQQMQL ENLSVSVLIN SAAGQGVFNN EAQLVKFGNM VKDAIGFSAA RGDSFTINAF EFTPTVVAEI PTSPWWQSEN YQSYLRYIIG GILGFGLILF VLRPLVKHLT RTAQITAPSI EPAALSAASA NALDGPTVDY APNQAHQLPS ADWLGSQGLP EPGSPLTVKM EHLALLANKE PARVAEVIAH WIGDKDGE
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