Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_3287 |
Symbol | |
ID | 5078360 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 3828585 |
End bp | 3829130 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640500488 |
Product | oligoribonuclease |
Protein accession | YP_001184798 |
Protein GI | 146294374 |
COG category | [A] RNA processing and modification |
COG ID | [COG1949] Oligoribonuclease (3'->5' exoribonuclease) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.161862 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGGCGA ATGTAAATAA TCTCATTTGG ATCGATCTTG AAATGACGGG GCTAGAACCT GATGTCGACA GAATTATTGA AATTGCCACT TTAGTGACGG ATCAAGAACT CAATATTATT GGTCAGGGCC CCGTAATTGC TATCCATCAG CCAGATGAAG TGCTTGCGGC AATGGATGAT TGGAATCAAA AGCATCATGG TGAGTCTGGA CTGATTGATC GCGTTCGAGC GAGCCAAGAT AATGAAGCGC AAGCTGTGGC AAAGACCATT GCATTTTTAG AGCAATATGT GCCTAAGGGC GCTTCACCTA TGTGTGGCAA TAGCGTTGGT CAAGACCGAC GTTTCCTCAA TCGCTATATG CGCGAACTGG AGGATTATTT CCATTATCGC AATCTTGATG TGAGCACAGT AAAAGAACTG GTCAAGCGCT GGAGTCCAGA AATTATGGAG GGCTTTAAGA AGCAAAATAC CCATCAAGCA CTACAAGATA TCCAAGAGTC GATTGCAGAA TTACAGTATT ACCGCAGCAA AGTATTTAAA ATTTGA
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Protein sequence | MTANVNNLIW IDLEMTGLEP DVDRIIEIAT LVTDQELNII GQGPVIAIHQ PDEVLAAMDD WNQKHHGESG LIDRVRASQD NEAQAVAKTI AFLEQYVPKG ASPMCGNSVG QDRRFLNRYM RELEDYFHYR NLDVSTVKEL VKRWSPEIME GFKKQNTHQA LQDIQESIAE LQYYRSKVFK I
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