| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3278 |
|---|
| Symbol | |
|---|
| ID | 5078347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3816825 |
|---|
| End bp | 3817967 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640500475 |
|---|
| Product | HflK protein |
|---|
| Protein accession | YP_001184789 |
|---|
| Protein GI | 146294365 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
|---|
| TIGRFAM ID | [TIGR01933] HflK protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0010392 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTGGA ATGAGCCCGG TAACAAGGGT AATGATCCTT GGGGAAATAA AGGTGGTAAC
GACAAAGGAC CACCGGACCT TGATGAGGTT TTTCGTAATC TTTCAAAGCG CTTTGGCGGC
AAAGGGACTG GTTCAGGCCA ATCTTTTAGT TCGCTAAGCT TAATCATCAT ACTTGCCATT
GCTTTAGCTG TTTGGGGACT CTCGGGTTTT TATACAATTA AAGAGGCAGA GCGTGGTGTG
GCATTGCGCT TTGGTAAACA CATTGGTGAG ATTGGGCCAG GACTTCACTG GAAAGCGACT
TTTATTGATG AAATTTATCC CGTCGACATT CAATCGGTTC GCTCTATTCC TGCGTCTGGT
AGTATGCTGA CGTCCGATGA AAACGTCGTG AAGGTAGAAC TCGATGTACA GTATCGAATT
TTAGATGCTT ATTCATACCT GTTCAGTGCT GTCGATGCGA ACGCCAGCTT ACGTGAAGCA
ACAGATAGCG CCCTGCGTTA TGTGATTGGT CACAATAAGA TGGATGATAT TTTAACGACG
GGTCGTGATG CTATTCGCCG CGATACGTGG AAAGAATTAG AACGTATCCT TGAACCATAC
AAATTGGGTC TCTCGGTTGT GGATGTTAAC TTCTTACCGG CACGTCCACC TGAAGAAGTG
AAAGATGCTT TCGATGATGC GATTTCTGCC CAGGAAGATG AACAGCGTTT TATTCGTGAA
GCTGAAGCTT ATGCCCGTGA GATTGAACCT AAAGCGCGTG GTGAAGTTGA GCGCATGGCA
CAACAAGCTA ATGCTTATAA AGAACGTGAA ATCTTAGAGG CTCGCGGTAA AGTGGCTCGT
TTCGAGTTGT TGTTACCTGA GTATCAAGCA TCGCCAGAGG TAACCCGTAA GCGTTTGTAT
CTTGATACAA TGCAACAAGT GATGACAGAG ACAAACAAAG TACTTATTGA TGCTAAGAAC
AATGGTAACT TGATGTACTT GCCGTTAGAT AAGTTAATGA AAGAGAAGCC TGCGACACCT
GAACTTGAGC CTAAACCTCA GCAGAATGTC AATTCTTCAT CTGTATCAAC GACTCGCATT
AGTAGTGAGC CTTTGAGTGG ACGTCCGTCC CGCGATGATC GTACTCGCCA AGGGAGGGAT
TAA
|
|---|
| Protein sequence | MAWNEPGNKG NDPWGNKGGN DKGPPDLDEV FRNLSKRFGG KGTGSGQSFS SLSLIIILAI
ALAVWGLSGF YTIKEAERGV ALRFGKHIGE IGPGLHWKAT FIDEIYPVDI QSVRSIPASG
SMLTSDENVV KVELDVQYRI LDAYSYLFSA VDANASLREA TDSALRYVIG HNKMDDILTT
GRDAIRRDTW KELERILEPY KLGLSVVDVN FLPARPPEEV KDAFDDAISA QEDEQRFIRE
AEAYAREIEP KARGEVERMA QQANAYKERE ILEARGKVAR FELLLPEYQA SPEVTRKRLY
LDTMQQVMTE TNKVLIDAKN NGNLMYLPLD KLMKEKPATP ELEPKPQQNV NSSSVSTTRI
SSEPLSGRPS RDDRTRQGRD
|
|---|
| |