Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_3257 |
Symbol | |
ID | 5080098 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 3788677 |
End bp | 3790092 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640500454 |
Product | lytic transglycosylase, catalytic |
Protein accession | YP_001184768 |
Protein GI | 146294344 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1388] FOG: LysM repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGGAAAA ATTTTCGCCA AATGCACGCT TTTGCAGTGC TTATGCTAGC CATGCTAACG GCTCATCTCA GTGGCTGCGT AGCCACCTCG GCGGATAATG CGCCAACAGA ATTCACTGCC ACTACGCCTG AAGAAATAGG TAAAAGTGAC CATTCAGCAC AAGAGACCAG CGATACACCT GAACCCGTTG AAGAACAATA CAGCGACGTA TGGGAAAAAA TTCAACATGC GCGCACTATT GACGTACACG ATGAAGCAGA AGTACGTAAA CAACGTAAAT TTTTTGCTGA TAAACAAAGG TTTATGAATC AAGTTGGTGA CCGTGCAGAG CCTTTTTTGT ATTACATCGT CAGTCAACTA GAAGCCCGTA ATATGCCGCT TGAATTAGCC TTATTACCTA TTGTTGAAAG CGGTTATAAC CCACTAGCGC AAGCCAATGG TCCGGCGGGT TTATGGCAGA TGATTCCTGC AACTGGTCGC AATTTTGGCC TGACCATTAA TTCCGCTTAT GATGGTCGTA AAGATGCGCT GGCCTCAACT GATGCCGTTC TCGACTACTT ACAGCACTTA TACGATACCC TAGGCAATGA CTGGATCAAC GCTGTAGCGG GCTATAACAG TGGTGAATTG GTTATAAAAT CCGCAATAGA AAGAAACAAA GCAAAGGGAA AGCCAACCGA TTTTTGGTCA CTTAATATCC CTGCAAGACA AGTACAAACA GTCCCTAAGT GGCTCGCTTT TATTCAAATT ATTCGCGAGC CTAGCCATTA CAACTTAAAA GTGCCTCCAG TTGCCAATCG CCCTTTCCTT GAGCGACTCC CCGCACCTAA TGGCGTTGAA ATTGGCCACA TTGCCAATGC GGCGGGACTC ACTAAAGCAG AGTTTAAAAC CTATAACCCT GGTTACCGTC AAAATGTGAT CCCCAGTAAA GGCAAATATC AAATAGCCCT TCCCATTGAA AACATTGGTG CCTATCAGGA AAATCAAGAT AAACTCTATG CCCAAAAAAG ATATGACAGC CAAAGTTACA TCGTCAAATC GGGTGATAGT CTAGGTGCTA TAGCGGCTAA GTTTGATATC TCAGTGAATG AGTTAAAACA GGCGAATAAC CTCACATCAG ATAGGATCAA AGTAGGCCAA GAACTCACGC TATTAACCCC TTTGGCGGCT AATGATAAAG AGACTAAAGT TGCCCCAGCA ACGCCTAAAA CAAGCAGTAA ATCTAGCGCC AAGGTCACTG AAACAAAAGC TAAAACGACG GAAACAAAAG CGGCTACTTA TAAGGTAAAA TCCGGTGACT CACTGGATAA AATCGCCCGT AAACATAAAG TCAAACTGGC TGATTTAATG AAGTGGAACC AGCTAAATGC TAAGAGCATT ATTAAACCCG GCCAAGAGCT AAAGCTATCC GAGTAA
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Protein sequence | MRKNFRQMHA FAVLMLAMLT AHLSGCVATS ADNAPTEFTA TTPEEIGKSD HSAQETSDTP EPVEEQYSDV WEKIQHARTI DVHDEAEVRK QRKFFADKQR FMNQVGDRAE PFLYYIVSQL EARNMPLELA LLPIVESGYN PLAQANGPAG LWQMIPATGR NFGLTINSAY DGRKDALAST DAVLDYLQHL YDTLGNDWIN AVAGYNSGEL VIKSAIERNK AKGKPTDFWS LNIPARQVQT VPKWLAFIQI IREPSHYNLK VPPVANRPFL ERLPAPNGVE IGHIANAAGL TKAEFKTYNP GYRQNVIPSK GKYQIALPIE NIGAYQENQD KLYAQKRYDS QSYIVKSGDS LGAIAAKFDI SVNELKQANN LTSDRIKVGQ ELTLLTPLAA NDKETKVAPA TPKTSSKSSA KVTETKAKTT ETKAATYKVK SGDSLDKIAR KHKVKLADLM KWNQLNAKSI IKPGQELKLS E
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