| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3054 |
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| Symbol | rumB |
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| ID | 5079796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 3542618 |
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| End bp | 3543787 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640500252 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_001184566 |
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| Protein GI | 146294142 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCGCTG TTATTGTAAA TACCGTCGAG CAATGTGGTT ATTTTAATCG AGGTCAGTGT
CAATCCTGTC GCCATATTCA AGTGCCTATG GCGCAACAGT TGATGGCTAA ATCCCTAGAA
TTACAGCAAT TACTCAAACC ATTTGTGGCA CCATCTGCAG CTATTTTTTA CCCTCCAGTG
ACTGGCGAGG CGACGGCTTT TCGCAATAAA GCCAAAATGG TGGTGTTAGG CGCGGCTCAT
GCACCTGTAC TTGGGATTGT TAGTCCAAGT GGTGAGGCGG TAAGTCTTTG TGATTGCTTA
CTCTATCCAT CTGATATGCA AAAGTTATTG CACCGTTTAA CGCAATTTGT ACAGCAGGCG
GGTATTCCGC CGTATCGTGT TGATAAAGCG AAGGGCGAGC TTAAGTTTAT TCTGCTAACG
CGTAGCCAAG TTCGTGGCGA ATATCTACTG CGTTTTGTAT TGCGCTCGCA CAATAGTATT
GAGCGTATCG AGAGAGCATT GCCTACATTA CTGGCCGAAT ACCCACAAAT TAACGTGGTT
TCAGTCAATA TTCAGCCTAT TCATATGGCG ATCCTTGAGG GGGGTGAGGA AATTTTCTTA
ACTGAAAATA CCCGCCTCGA AGAGCGTTTT AACGATGTGC CTTTGTTTAT TCGACCTAAA
AGTTTTTTCC AAACCAATCC TCAAGTCGCT GCGCAGTTAT ACCAAACAGC CCGTGAGTGG
GTTGCTGAGT TTGCTCCTAA GTCGCTCTGG GATCTCTTTT GCGGAGTCGG TGGTTTTGGC
TTGCACTGTG CGACTAAGGA TATCGCGCTT ACAGGCATTG AAATTGAAGC AGAGGCCATT
AGTTGTGCAC AAATATCGGC TAACTTGATG GGGCTTGAGA AGGTGCAATT TATGGCGCTT
GATTCAACTG ATTTTGCTCA GGGCAAAAAC GCCGCCGATA AGCCTGATTT GATTATTGTC
AATCCGCCAC GGCGCGGGAT TGGAGAGGCA TTGTGTCAAT CCTTAAGCGA GTTTGCGCCT
AAGGCGATTC TTTATTCCAG TTGTAACCCA AAGACCTTAG CTAAAGATCT CGAGCACATT
CAAGGTTATC ACTTAACTAA AGTGCAACTG TTTGATTTAT TTCCGCACAC AGATCACTTC
GAAGTATTAG CCATGTTAGT GAAGGATTAA
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| Protein sequence | MSAVIVNTVE QCGYFNRGQC QSCRHIQVPM AQQLMAKSLE LQQLLKPFVA PSAAIFYPPV
TGEATAFRNK AKMVVLGAAH APVLGIVSPS GEAVSLCDCL LYPSDMQKLL HRLTQFVQQA
GIPPYRVDKA KGELKFILLT RSQVRGEYLL RFVLRSHNSI ERIERALPTL LAEYPQINVV
SVNIQPIHMA ILEGGEEIFL TENTRLEERF NDVPLFIRPK SFFQTNPQVA AQLYQTAREW
VAEFAPKSLW DLFCGVGGFG LHCATKDIAL TGIEIEAEAI SCAQISANLM GLEKVQFMAL
DSTDFAQGKN AADKPDLIIV NPPRRGIGEA LCQSLSEFAP KAILYSSCNP KTLAKDLEHI
QGYHLTKVQL FDLFPHTDHF EVLAMLVKD
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