| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3021 |
|---|
| Symbol | mdoD |
|---|
| ID | 5079763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3504620 |
|---|
| End bp | 3506404 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640500219 |
|---|
| Product | glucan biosynthesis protein D |
|---|
| Protein accession | YP_001184533 |
|---|
| Protein GI | 146294109 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTATCA TTGTCATCAA CAGTTCTCCA CAGGGCAGTC ATTGCATATT GCTTATATGT
GCAGCGAAGT GTCAGGAAGT TACACCAATT CAGAGTCTGC TTATGCAACC CAATTTATTT
CCCGAACAAA GAAATGTTAA CCGTGAATTG ATGGCTATGC CGTCATCAGT TGAAATTCAA
TCTACTCGTG GACGTTTGCA ACGTATGGTT GGCAGTGTAT TGCTGACCTG TAGTGTATTG
CTAAGTCTTT CCGCCTGCGC TGCAGGTAAG GCGAGCGCGC CGCAAGAGGG CGAAGAGTTC
AGTTATGCAT GGCTTAAGGG TCATGCTCGT ACACTTGCTG CTGAGTCCTA TGTTAGTCAC
AAGGGCGAAC TGCCTAAAAG CCTGCAGGGG ATGAGCTGGG ATGATTACCA GCAGTTCCAT
TTTAAGAAAA AAGCGGCAAT GTGGCGTGAT CAGGATTCTG AGTTTCGTGC CGAATTATTT
CACCTAGGTT TGTATTTTGA TACGCCAGTA CATATCTATG AGTTAGATGA GAGTAAGGCC
AAACTTATCG AATACTCACC ATCGATGTTT GATTACGGCA AGTCTAAAGT GAAAGGAAGT
CAGCTACCTA AAGATCTCGG TTTTGCTGGA TTTAGAATGC AGTTTAATAC CGATTGGCAG
CGTGATGTGG TGGCTTTCCT TGGGGCGAGT TATTTCCGAG CGGTAGGTCA AGAGATGCAA
TACGGTTTAT CAGCCCGTGG TTTGGCGGTT GATACTGCAT TACCAAAACC TGAAGAGTTT
CCAATGTTTA CTCATTTCTG GTTAGAGAAA CCTAAACCAG GCTCGAATAT TGCCACCGTC
TATGCATTGT TAGATTCTCC AAGTGTGACT GGCGCTTACC GTTTTGACAT TGAGCCAGGT
GAGCGTTTGA AGATGAAAGT CGATGCGGCG ATTTATCCCC GTAAAGCGAT TGAGCGTTTA
GGTGTCGCGC CACTAACCAG TATGTATATG GTGGGTGAAA ACGATCGCCG TACTGGTTAT
GACTGGCGTC AAGAGATCCA CGATTCGGAT GGCTTAGCAA TGCATACCGG GAGCGGCGAA
TGGATTTGGC GTCCACTCGC TAACCCAGAA AATCTGCGAT TCAACGCCTA TAGCGATGAA
AATCCAAGAG GTTTTGGTTT AATGCAGCGC GATCGTAATT TTGATCATTA TCAGGATGAC
GGTGTTTTCT ACGAAAAACG TCCAAGTTTA TGGATTGAAC CTACGGGAAG TTGGGGTAAA
GGTTCTGTAC AGCTAGTGGA AATCCCAACG CTGGATGAAA CCTTCGATAA CATAGTGGCA
TTTTGGAACC CTGCAGAGCC TATTTTACCA GGTCAAGAGT TGCTTTATAG CTACAACATG
TATTGGGGAG GCATTCCACC TGTGCAATCA CCTCGTGCCC GTGTTGTTGA TACTTTCACT
GGTTTAGGTG GTGTGGTTGG TCAGAAGCGC AAATATTACA GTAAGCGCTT TGTTATCGAT
TTTGCTGGTG GCACTTTACC TATGTTAGGC AAAGATACTC AAGTAAAAGC GGTGATCAGT
ACCTCACAAG GCCGTGTAGA AATCGAATCA GCACGTCCTT TAGCATCGAT TAATGGCTAT
CGTGCTATGT TTGATGTAGT GCCTCCAGAG GACAGCGTTG AGCCAATTAA CCTAAGAGTT
TACTTAGAAG TCGATGGTCA ACCACTGTCT GAAACTTGGA TGTATCAGTG GAATCCGCCC
GCTAAGGATG ATCGTGAACT CTATAACGCG GGCCATCTGC AATAA
|
|---|
| Protein sequence | MVIIVINSSP QGSHCILLIC AAKCQEVTPI QSLLMQPNLF PEQRNVNREL MAMPSSVEIQ
STRGRLQRMV GSVLLTCSVL LSLSACAAGK ASAPQEGEEF SYAWLKGHAR TLAAESYVSH
KGELPKSLQG MSWDDYQQFH FKKKAAMWRD QDSEFRAELF HLGLYFDTPV HIYELDESKA
KLIEYSPSMF DYGKSKVKGS QLPKDLGFAG FRMQFNTDWQ RDVVAFLGAS YFRAVGQEMQ
YGLSARGLAV DTALPKPEEF PMFTHFWLEK PKPGSNIATV YALLDSPSVT GAYRFDIEPG
ERLKMKVDAA IYPRKAIERL GVAPLTSMYM VGENDRRTGY DWRQEIHDSD GLAMHTGSGE
WIWRPLANPE NLRFNAYSDE NPRGFGLMQR DRNFDHYQDD GVFYEKRPSL WIEPTGSWGK
GSVQLVEIPT LDETFDNIVA FWNPAEPILP GQELLYSYNM YWGGIPPVQS PRARVVDTFT
GLGGVVGQKR KYYSKRFVID FAGGTLPMLG KDTQVKAVIS TSQGRVEIES ARPLASINGY
RAMFDVVPPE DSVEPINLRV YLEVDGQPLS ETWMYQWNPP AKDDRELYNA GHLQ
|
|---|
| |