Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2829 |
Symbol | |
ID | 5078661 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 3286214 |
End bp | 3288313 |
Gene Length | 2100 bp |
Protein Length | 699 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640500023 |
Product | polynucleotide phosphorylase/polyadenylase |
Protein accession | YP_001184347 |
Protein GI | 146293923 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000362505 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAATCCAA TTGTAAAGAG TTTTGAGTAT GGTCAACATA CAGTCACCCT GGAAACAGGC GTTATAGCGC GTCAAGCTGA TGCCGCTGTG TTAGCAAGTA TGGGTGACAC AACAGTGTTA GTCACTGTTG TTGGTAAAAA AGAAGCCGAA GCCGGTCGTG ATTTTTTCCC TCTGACTGTT AACTATCAAG AAAAAACCTA CGCAGCAGGT AAAATTCCTG GCGGTTTCTT TAAGCGTGAG GGTCGTCCTT CAGAAGATGA GACATTAATT GCTCGTCTTA TTGACCGCCC AATTCGTCCT CTTTTCCCTA ATGGTTTCAA AAACGAAGTT CAAGTTATCA TCACAGTTGT ATCTGTCGAC CCACAAATTG AGCCAGATAT CATCTCTATG ATCGGTACTT CTGCTGCATT GGCCATTTCT GGTATCCCGT TTAGCGGTCC TTTGGGCGCT GCTCGTGTCG GTTATATCAA TGGTGAATAT GTATTGAACC CAACAGTGGC TCAAATTGAA ACGAGCCAAT TGAACTTAGT GGTTGCTGGT ACAGCAAGTG CAGTGTTAAT GGTGGAATCA GAAGCCCAAG CATTACCAGA AGAAGTGATG TTAGGTTCTG TTGTTTATGG TCACGATCAA CAACAAGTGG TTATTAACGC GATTGCTGAG TTTAAAGCTG AAGCGGGTAA ACCAATGTGG GATTGGACTG CGCCAGTGCA AGATGAAACG CTTGTTGCTC AAATTAAAGA GTTGGCTGAA GCGGGTTTAG GCGATGCGTA TAAAATCCAA GTTAAGCAAG ACCGTTATGC TCAAGTTGCT GTAGTTAAAG CTGCAACGAA AGAAGCGTTA TTAGCAAGCA ATCCAAATAT TGATTTACGT GAAGTAGACA ATTTACTGGG CAGCTTAGAG AAGAAAGTCG TTCGTGGTCG TATTATTCGT GGCGAGCCGC GTATCGATGG TCGTGAACCC GATATGATCC GTGCGTTAAG TGTATTAGCG GGAGTATTGC CACGTACTCA CGGTAGCGCC TTGTTCACTC GCGGCGAAAC CCAAGCCTTA GTAACTTGTA CTTTAGGTAC TGAACGTGAT GCACAGAAGA TCGATAGCAT CATGGGTGAG CGCACTAATC GTTTTATGTT GCACTATAAC TTCCCTCCTT ACTCTGTTGG TGAAACCGGT ATGGTGGGTT CACCTAAGCG CCGCGAAATC GGTCATGGAA AGTTAGCATG GCGTGGTATT AACGCTGTGA TGCCATCGGC AGAAGAATTT CCATACAGCG TGCGCGTTGT ATCTGAAATT ACTGAATCTA ATGGTTCAAG TTCTATGGCG TCTGTCTGTG GTACTTCCCT TGCGCTGATG GATGCGGGTG TACCTATCAA GACTTCTGTA GCAGGTATTG CTATGGGTCT TGTAAAAGAA GGCGATGATT TTGTCGTACT TTCAGACATC TTAGGTGATG AAGATCATTT AGGTGATATG GACTTTAAAG TGGCGGGTAC CCGTGGTGGT ATTACTGCAC TGCAAATGGA TATCAAGATC GAAGGTATCA CCAAAGAAAT TATGGAAATT GCACTACAAC AAGCCTATGG CGCACGTGTG CATATTCTAA ATGTGATGGA TCAAGCGATT GGTTCGCACC GTGATGATAT TTCTGATCAT GCTCCACGTA TCACTACAAT CAAAATTAAC CCAGAGAAAA TCCGTGATGT TATCGGTAAA GGTGGCGCAG TTATTCGTGC TCTGACCGAA GAAACTGGCA CTACGATTGA GCTGGAAGAT GATGGTACGG TAAGAATTGC CTCTTCAAAT GGTGAAGCGA CCAAAGAAGC TATCCGCCGT ATTGAAGAAA TCACTTCAGA AGTCGAAGTG GGCCGTATCT ATAATGGTAA AGTGATCCGT ATCGTTGATT TCGGTGCATT TGTGAACATT CTGCCGGGCA AAGATGGTTT AGTACACATT TCACAAATCA GTGATGAACG TGTGGCTAAC GTGTCTGATC ACCTTGAACT TAACCAAGAA GTTGCTGTTA AGGTAATGGA AGTGGATCGT CAAGGTCGTG TACGCTTATC AATCAAAGAA GCACAAACGA AAGAAGCTGC AGCAGAATAA
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Protein sequence | MNPIVKSFEY GQHTVTLETG VIARQADAAV LASMGDTTVL VTVVGKKEAE AGRDFFPLTV NYQEKTYAAG KIPGGFFKRE GRPSEDETLI ARLIDRPIRP LFPNGFKNEV QVIITVVSVD PQIEPDIISM IGTSAALAIS GIPFSGPLGA ARVGYINGEY VLNPTVAQIE TSQLNLVVAG TASAVLMVES EAQALPEEVM LGSVVYGHDQ QQVVINAIAE FKAEAGKPMW DWTAPVQDET LVAQIKELAE AGLGDAYKIQ VKQDRYAQVA VVKAATKEAL LASNPNIDLR EVDNLLGSLE KKVVRGRIIR GEPRIDGREP DMIRALSVLA GVLPRTHGSA LFTRGETQAL VTCTLGTERD AQKIDSIMGE RTNRFMLHYN FPPYSVGETG MVGSPKRREI GHGKLAWRGI NAVMPSAEEF PYSVRVVSEI TESNGSSSMA SVCGTSLALM DAGVPIKTSV AGIAMGLVKE GDDFVVLSDI LGDEDHLGDM DFKVAGTRGG ITALQMDIKI EGITKEIMEI ALQQAYGARV HILNVMDQAI GSHRDDISDH APRITTIKIN PEKIRDVIGK GGAVIRALTE ETGTTIELED DGTVRIASSN GEATKEAIRR IEEITSEVEV GRIYNGKVIR IVDFGAFVNI LPGKDGLVHI SQISDERVAN VSDHLELNQE VAVKVMEVDR QGRVRLSIKE AQTKEAAAE
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