| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2795 |
|---|
| Symbol | |
|---|
| ID | 5080768 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 3246425 |
|---|
| End bp | 3247240 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640499989 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001184313 |
|---|
| Protein GI | 146293889 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAC AGCGAGCATA TAATTTGCGC TTTTCATTTA TACTCGCCGC CGTTTTGCTA
TCTCTTACTC ACTTTTATGG TATAGCAATG GCTCAAGAAA CAGATGCCAT ACCCCTAGTC
GCTCAAGACA AGACTATTAT CTTAGCCGCC GAAGATAGCT GGCCTCCTTT TGCTAATCAG
TTTGGCCAAG GTATTTCCCA TCGCTTAATC AAAGCCGCTT TTAAACAATC TCAAATTGAA
ATTAATAGCT TAGTCGTTCC CTATACCCGC GCCTTAATGA TGGCAGAGAA AGGTGATGTA
GATGGTGTGT TCAATGTCAC CCGCGAAGCG AGCACTGAAC AACGTTTTGT TTTTGGACAG
TTCCCTTTAT TTGTTGCAAC AGCCTCTTTT TATCAAAAGA AACAAAAATC AATTCTGGCA
GACAATAAAT GGGCTCTCCC TAGAGGTACA GTTGTTGGGA TCGTTAAAAG CTATGAATAT
GGCGATGATT TTCCTGCGCT CGTTAAACAA CAACAGCTTA ATATTGTTGC TGTAGCCAAC
CAACTACAAC TCATTAATTT ACTATTAATT GGTCGTATAG ATACCGCATT GATGTTCGAT
TTAGTCGCGA AGGATAACCT TCAGACAATG GGCGTTGATG ATGAAATCAT TCCGATATTT
GCTAATCACA GCAGTAATAT TTATCTGGCT TTCTCGAAGG AAAATCCACA GGCACATACC
CTAGCAAGCC AACTTGATGC TGGTTTATCC CAACTCAAAG CCACTGGCCA GTATGAAAAA
CTATTCTCAT TGAGTCCTAT CGCTGCGAGC GAATAA
|
|---|
| Protein sequence | MKIQRAYNLR FSFILAAVLL SLTHFYGIAM AQETDAIPLV AQDKTIILAA EDSWPPFANQ
FGQGISHRLI KAAFKQSQIE INSLVVPYTR ALMMAEKGDV DGVFNVTREA STEQRFVFGQ
FPLFVATASF YQKKQKSILA DNKWALPRGT VVGIVKSYEY GDDFPALVKQ QQLNIVAVAN
QLQLINLLLI GRIDTALMFD LVAKDNLQTM GVDDEIIPIF ANHSSNIYLA FSKENPQAHT
LASQLDAGLS QLKATGQYEK LFSLSPIAAS E
|
|---|
| |