Gene Sputcn32_2749 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_2749 
Symbol 
ID5080816 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand- 
Start bp3186247 
End bp3187227 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content41% 
IMG OID640499943 
ProductRpoD family RNA polymerase sigma factor 
Protein accessionYP_001184267 
Protein GI146293843 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCGTA TAAATAGCAC TGCCGCAGAA GAATTAGTCG ATTTTTCCGT TGAAACCGCA 
GAGTTTGATC TCGAAAAAGA GGATATTGCT ACAGATTTAG TTCAAGAACT TGGACTAGAA 
CAACAGGTTC AAGATGACCT GCAAAAAAAT CTTGATGCCA CGCAACTCTA TTTAGGTGAA 
ATAGGGTTTT CCCCCCTGCT TAGCGCAGAA GAAGAAGTTT ACTTTTCTCG TAAAGCCTTA 
AAAGGCTGTG AAAAATCCCG TAATCGCATG ATTGAAAGTA ATCTTAGACT TGTTGTTAAG 
ATTGCACGTC GTTATAACAA CCGAGGATTA GCACTCTTAG ATTTAATCGA AGAAGGGAAC 
TTAGGACTTA TCCGCGCGGT AGAAAAATTT GATCCCGAAA GAGGTTTTCG TTTCTCAACC 
TATGCAACTT GGTGGATTCG TCAAACGATT GAACGTGCAA TTATGAATCA AACTCGCACC 
ATTCGTTTAC CGATTCATGT TGTTAAAGAG TTGAACGTAT ATTTAAGAAC CGCTCGGGAA 
TTAGCGCAAA AATTGGATCA CGAACCGACA GCTGAAGAAA TTGCTGAAAA ATTGCAAGTC 
CCTAGTGCAG ATGTCAGCCG TATGTTGAAG TTGAATGAAA AGATTACCTC AGTCGATACG 
CCTTTGGGGG GCGATAATGA CAAAGCGCTG ATCGATATAT TGGCCGATGA TGACAGTGTA 
GGCCCTGACT ATAAGGTACA GGATGAAGAT ATCTCAAACT CGGTAGTGAA ATGGCTCAAT 
GAGTTAAATA CTAAACAAAG AGAGGTATTA GCTCGTCGTT TTGGATTATT AGGCTATGAG 
CCATCGACAT TGGAAGATGT CGGGGCAGAG ATAGGGTTAA CCCGTGAGCG TGTTCGTCAA 
ATTCAAGTTG AAGCCTTAAA ACGTCTACGT GATTTACTCG GTTCACAAGG CCTATCTGTT 
GAAGCGTTGT TTAGAAATTA A
 
Protein sequence
MSRINSTAAE ELVDFSVETA EFDLEKEDIA TDLVQELGLE QQVQDDLQKN LDATQLYLGE 
IGFSPLLSAE EEVYFSRKAL KGCEKSRNRM IESNLRLVVK IARRYNNRGL ALLDLIEEGN 
LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE LNVYLRTARE 
LAQKLDHEPT AEEIAEKLQV PSADVSRMLK LNEKITSVDT PLGGDNDKAL IDILADDDSV 
GPDYKVQDED ISNSVVKWLN ELNTKQREVL ARRFGLLGYE PSTLEDVGAE IGLTRERVRQ 
IQVEALKRLR DLLGSQGLSV EALFRN