| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2687 |
|---|
| Symbol | |
|---|
| ID | 5079998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 3114900 |
|---|
| End bp | 3115598 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640499869 |
|---|
| Product | alanine racemase domain-containing protein |
|---|
| Protein accession | YP_001184205 |
|---|
| Protein GI | 146293781 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
|---|
| TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.91415 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAA TAGCAGACAG ACTCGCAATC GCCCAGTGTA GGATCGCCCA AGCGGCGCAA
AAATGTGCTC GCCAAGCTCA CAATATTCGT CTTCTTGCAG TGAGTAAGAC AAAACCCATT
GAAGATATAA TCGCAGCTTA CCATGCAGGG CAACGCTGCT TTGGTGAAAA CTATGTTCAA
GAGGGCGCCG CAAAAATCAC TGAACTAAGC AAAAACTATC CGGACATTGA ATGGCATTTT
ATCGGCCCAC TTCAATCAAA TAAAACCAAT ATTGTTGCTC AACATTTTGA CTGGATGCAT
ACGGTATCAC GGGACAAAAT TGCCCTTCGT CTGAACGAGC AACGTCCGAC ATCCATGGCA
CCTCTTAATG TTTGTATTCA AATCAATATC AGTGATGAAG ATACAAAATC AGGTATCGAT
GCTAACCAAA TGATGCCGTT AGCAGAATTA ATCTCGCAGT TGCCTAATTT AAAACTGAGG
GGACTGATGG CTATCCCAAC AGCTACAGAT AATTCAACGT TGCAACGCCA AGAGTTCACT
AAACTAAAGC AATTATTCGA TGAGTTGAAA CAGCATTATG CTGATGTTGA TACCCTATCT
ATGGGGATGA GTAATGACCT TGATACCGCG ATTGCATGTG GCTCGACTAT GGTACGCATT
GGCAGTGCGA TTTTTGGTGA GCGTCACTAC GCTGAGTAA
|
|---|
| Protein sequence | MTTIADRLAI AQCRIAQAAQ KCARQAHNIR LLAVSKTKPI EDIIAAYHAG QRCFGENYVQ
EGAAKITELS KNYPDIEWHF IGPLQSNKTN IVAQHFDWMH TVSRDKIALR LNEQRPTSMA
PLNVCIQINI SDEDTKSGID ANQMMPLAEL ISQLPNLKLR GLMAIPTATD NSTLQRQEFT
KLKQLFDELK QHYADVDTLS MGMSNDLDTA IACGSTMVRI GSAIFGERHY AE
|
|---|
| |