| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2576 |
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| Symbol | fliF |
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| ID | 5078265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 2996312 |
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| End bp | 2997994 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640499759 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_001184096 |
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| Protein GI | 146293672 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.108144 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGTCG GGTCTAATTC CGATTTAGCA GACCAAGGTG TCCAAGAAGA ACATAAGTCA
GGTGTGATGG GGAGCCTTGG CGGTGTCGAT ATGATGCGCC AAATTACCAT GATCCTTGCG
TTGGCAATCT GCTTAGCCCT AGCCGTTTTT GTGATGTTAT GGGCTCAGGA ACCTGAGTAT
CGTCCATTAG GAAAAATGGA AACTCAGGAA ATGGTACAAG TACTCGATGT CTTGGATAAG
AATAAGATCA AGTATCAGAT CGAGGTTGAT GTTATTAAAG TACCTGAGGA TAAATATCAA
GAAGTCAAAC TGATGTTAAG CCGAGCAGGG ATTGACGGTG GCACTACAAG TAAAGATTTT
TTAACCCAAG ACAGTGGTTT TGGTGTCAGC CAAAGGATGG AACAAGCGCG TCTTAAACAC
AGCCAAGAAG AAAACCTTGC CCGCGCTATT GAGCAGCTAC AAAGTGTCAG TCGCGCAAAA
GTGATTCTCG CACTTCCCAA AGAAAACGTC TTTGCCCGTA ATACTTCCCA ACCTAGCGCA
ACCGTGGTTA TCAATACCCG TCGTGGCGGT TTAGGCCAAG GAGAGGTGGA TGCCATTGTT
GATATTGTTG CCTCAGCCGT GCAAGGGTTG GAACCATCGC GTGTTACCGT CACTGATTCA
AATGGTCGTT TGCTTAACTC TGGGAGCCAA GATGGCGTTT CCGCTAGGGC GCGTAGAGAA
CTCGAATTAG TACAACAAAA AGAAGCTGAA TATCGCACAA AAATTGAATC AATTTTAGTC
CCCATTTTAG GGCCTGATAA CTTTACTTCC CAAGTCGATG TTAGCATGGA CTTTACCGCA
GTCGAACAAA CAGCCAAGCG CTTTAATCCT GATTTACCAG CATTACGCAG TGAAATGACG
GTTGAGAATA ACTCTACCGG TGGCACTACG GGGGGGATCC CTGGCGCTCT GTCAAATCAA
CCGCCAATGG AGTCAGATAT TCCTGAAGAT GCAACCAATG CATCTGAAAA AGTGGTTGCG
GGTAACTCTC ACCGTGAAGC AACACGAAAT TTCGAGCTCG ATACCACCAT TAGCCATACC
CGTCAGCAAA TTGGGGTAGT CAGACGAATT AGTGTTTCAG TTGCTGTGGA CTTTAAACCC
GGTGCTGCAG ATGAAAATGG CCAAGTGGCA CGCGTTGCCC GTACTGAGCA AGAGTTAACC
AACATTCGTC GTTTACTAGA AGGTGCAGTA GGATTCAGCA CACAACGTGG TGATGTGTTG
GAAGTGGTTA CCGTTCCTTT TATGGATCAA CTGATGGAAG ACATACCATC TCCTGAATTA
TGGGAACAGC CGTGGTTCTG GCGTGCGGTA AAATTGGGTG TTGGCGCCTT GGTGATCCTA
GTATTGATAT TGGCCGTGGT TCGTCCAATG CTAAAACGCC TTATTTATCC TGATAGTGTA
AACATGCCAG ATGATTCAAG ACTGGGTAAT GAACTGGCGG AAATTGAAGA TCAGTACGCT
GCCGACACCT TAGGTATGCT TAATACCAAA GAAGCAGAAT ACAGTTATGC CGATGATGGC
TCAATTCTTA TCCCTAATCT TCATAAAGAT GATGATATGA TTAAAGCTAT CCGTGCGCTT
GTGGCAAATG AGCCCGAGCT TTCCACTCAA GTCGTGAAAA ACTGGTTACA AGACAATGGC
TGA
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| Protein sequence | MIVGSNSDLA DQGVQEEHKS GVMGSLGGVD MMRQITMILA LAICLALAVF VMLWAQEPEY
RPLGKMETQE MVQVLDVLDK NKIKYQIEVD VIKVPEDKYQ EVKLMLSRAG IDGGTTSKDF
LTQDSGFGVS QRMEQARLKH SQEENLARAI EQLQSVSRAK VILALPKENV FARNTSQPSA
TVVINTRRGG LGQGEVDAIV DIVASAVQGL EPSRVTVTDS NGRLLNSGSQ DGVSARARRE
LELVQQKEAE YRTKIESILV PILGPDNFTS QVDVSMDFTA VEQTAKRFNP DLPALRSEMT
VENNSTGGTT GGIPGALSNQ PPMESDIPED ATNASEKVVA GNSHREATRN FELDTTISHT
RQQIGVVRRI SVSVAVDFKP GAADENGQVA RVARTEQELT NIRRLLEGAV GFSTQRGDVL
EVVTVPFMDQ LMEDIPSPEL WEQPWFWRAV KLGVGALVIL VLILAVVRPM LKRLIYPDSV
NMPDDSRLGN ELAEIEDQYA ADTLGMLNTK EAEYSYADDG SILIPNLHKD DDMIKAIRAL
VANEPELSTQ VVKNWLQDNG
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