| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2527 |
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| Symbol | |
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| ID | 5080871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 2943787 |
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| End bp | 2945727 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640499710 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001184047 |
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| Protein GI | 146293623 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATTTT TGCAATTTTT ATTTTCGTTA ACACGATCAC AGAAGCGTTT AGTCAGTGTC
GCTATCGATT CAGTGTTTTT ACTTTTTGCG TTTTGGTTTG CCCTATTGGT ACGCCTTGAT
TCAATTGAGG TATTAGTCAA ACCTCAATAT TGGGGGTTGA TAGTCCTGAC TATACCTGTG
AGTATCGCTG GGTTTGTGAG GCTGGGGCTT TATCGTGCTG TTCTACGTTA TATTGGCTCT
CAGGCATTTA CTGCAATTGT TACTGGTGTA TTAATTTCGA CTATTACACT TGTTCTACTC
GCTTATTACG GTAGTGTAGA TTTACCTCGA ACTGTCCCTT TTATCTATGC TGCCTTTGCT
TTAGTTTTTG TGGGTGGTGC CAGATCACTT ATGCGTTCAT TGGTTGGCGC AGGAATTAAT
CGTCGTGGTG AGCCTGTGGT GATTTATGGC GCGGGAGTGA GTGGAAGACA AACGGCAATT
GCCCTTGCAC AGAGTCATGA ATACCATCCC ATTGCCTTTG TTGATGATGA TGAATGCCTG
CAAGGTACTG TGATCCAAGG CTTACATGTA CATACTCCAC AAGTGTTGCA TAAATTGATT
AAGCAAAAAG CGGCTACCCG TGTGTTGCTT GCAATGCCTA GTGCATCTCG CTCCCGTAGA
CAAGAGATTA TTGCTCAGTT GGAGCCGCTA ACTGTTAAAG TTATGACATT ACCAGCAATG
GCGGATCTTG TTAGTGGTGA TAAATTATTT AGTGACGTAA AAGAAGTTGA AATTGAGGAT
TTACTTGGTC GTGATTCTGT TGCACCTAGA CAAAACCTAT TAACTGCCAA TATTAAAAAT
AAAGTGGTTA TGGTCACGGG GGCGGGAGGA TCAATTGGCT CTGAGCTATG TCGGCAAATA
TTAAAGCAGT CACCCAAAAA ATTGGTGTTA TTTGAGTTAT CAGAATTTGC TTTGTACTCG
ATTGAGCGTG AACTTTGCGC AACCGCTGCA GAGCTAGGGC TTGAGCTTGA TATTTTACCT
ATTATGGGGT CGGTGCAGCG TGAGAACCGT GTTCAAGCTG TTATGCAGGC TTTTAAAGTA
CAAACGGTTT ACCATGCTGC TGCTTATAAA CATGTGCCTT TAGTTGAACA TAACGTCGTT
GAAGGTGTAC GCAATAATGT ATTTGGTACT TTGTATACCG CTAGAGCTGC GATTGCTGCA
AAAGTAGAAA CCTTTGTTTT AGTGTCTACT GATAAAGCTG TACGTCCCAC TAATATTATG
GGGACAACCA AGAGAATGGC TGAATTGGCA TTACAAGCAT TAGCAAAAGA AGAACATCAA
ACTCGTTTTT GTATGGTGCG TTTTGGTAAT GTGCTGGGTT CTTCTGGTTC TGTAGTGCCA
TTATTCCGTA AACAGATTGC TAACGGCGGC CCAGTTACTG TGACTCACCC AGAAATTACG
CGCTTTTTTA TGACAATTCC TGAAGCATCC CAGTTGGTCA TTCAAGCTGG CGCGATGGGA
AAGGGCGGGG ATGTATTTGT GCTTGATATG GGTAAATCAG TAAAAATTGT TGATTTAGCC
GCAAAAATGA TCCGACTAAG TGGTTATGAA GTAAAGGATG AAGATCATCC TAATGGTGAT
ATCGCTATCG AATTTAGTGG ATTACGTCCA GGAGAGAAGC TCTATGAGGA ATTACTCATA
GGTGATGATG TTACTGGTAC AGATCATGAA CGAATTATGA CTGCTCATGA AACATATTTA
CCTTGGAGTG AGTTAGAGTT GATTTTTAAT CGTTTGGATA AAGCTTGTCA TGAGTTTAAC
CATGAGGCGA TTCGTGAAAT TTTACTTGCA GCACCTACTG GATTTGCCCC AACTGATGGA
ATTTGTGATT TGGTTTGGCA ACAAAAGAAA TCATTAAAAC CAATCGATGT TAAAGGTAAA
GTCGTAACTT TAGTTTCATA G
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| Protein sequence | MEFLQFLFSL TRSQKRLVSV AIDSVFLLFA FWFALLVRLD SIEVLVKPQY WGLIVLTIPV
SIAGFVRLGL YRAVLRYIGS QAFTAIVTGV LISTITLVLL AYYGSVDLPR TVPFIYAAFA
LVFVGGARSL MRSLVGAGIN RRGEPVVIYG AGVSGRQTAI ALAQSHEYHP IAFVDDDECL
QGTVIQGLHV HTPQVLHKLI KQKAATRVLL AMPSASRSRR QEIIAQLEPL TVKVMTLPAM
ADLVSGDKLF SDVKEVEIED LLGRDSVAPR QNLLTANIKN KVVMVTGAGG SIGSELCRQI
LKQSPKKLVL FELSEFALYS IERELCATAA ELGLELDILP IMGSVQRENR VQAVMQAFKV
QTVYHAAAYK HVPLVEHNVV EGVRNNVFGT LYTARAAIAA KVETFVLVST DKAVRPTNIM
GTTKRMAELA LQALAKEEHQ TRFCMVRFGN VLGSSGSVVP LFRKQIANGG PVTVTHPEIT
RFFMTIPEAS QLVIQAGAMG KGGDVFVLDM GKSVKIVDLA AKMIRLSGYE VKDEDHPNGD
IAIEFSGLRP GEKLYEELLI GDDVTGTDHE RIMTAHETYL PWSELELIFN RLDKACHEFN
HEAIREILLA APTGFAPTDG ICDLVWQQKK SLKPIDVKGK VVTLVS
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