Gene Sputcn32_2501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_2501 
Symbol 
ID5080845 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand+ 
Start bp2905677 
End bp2906321 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content39% 
IMG OID640499684 
Producttripartite ATP-independent periplasmic transporter DctQ 
Protein accessionYP_001184021 
Protein GI146293597 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGATATCGC GAATTTTTGG TTACTTTGAA ATAGGTATGC TCAATTTACT TATTACCCTG 
ATGACACTGC TTGTATTTAC AGAGGTTGTA GCACGGTTTT TCTTTAATAC CGGTTTTCTG 
TGGATCCAAG AACTGACATT AACCCTGTGT GGGTGGTTTG TGTTGTTTGG TATGTCCTAC 
GGAGTCAAGG TTGGCGCACA TATCGGTGTC GATGCCTTTG TAAAAAGCTT GCCGCCAAAG 
GCAAAAAAAA TCACCTCCTT AATCACAACC TCAATCTGTT TAATTTATTG TGGATTGTTT 
TTAAAAGGCA GTTTTGAATA TCTATCGCAG ATGTATCACG TTGGTGTACC AATGGAAGAC 
ATCCATTTTC CAAGAGCATT ACTCAATAAT TTAGATCCTG ATTTTGCTTG GAATACCCTA 
AGAATTGACG TGGATGATGG GGCTGTCCCC ATTTGGTTAT CCCAAAGTAT CCTGTTGATT 
GGTTTTACTA TGCTCACATG GCGTTTTCTA GAATTATTTA TCGCCATTCT CCGCAACCAA 
GTCTCAGGCT TAAAATTTGC CGATGAAGCG AAAGAAAGTA TGCATTTAAT CGATGAAAGT 
GCGCAGCAAA CTCACACAAC GACAGATAAC AAGGAGGTAA AATAA
 
Protein sequence
MISRIFGYFE IGMLNLLITL MTLLVFTEVV ARFFFNTGFL WIQELTLTLC GWFVLFGMSY 
GVKVGAHIGV DAFVKSLPPK AKKITSLITT SICLIYCGLF LKGSFEYLSQ MYHVGVPMED 
IHFPRALLNN LDPDFAWNTL RIDVDDGAVP IWLSQSILLI GFTMLTWRFL ELFIAILRNQ 
VSGLKFADEA KESMHLIDES AQQTHTTTDN KEVK