Gene Sputcn32_2482 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_2482 
SymbolsecD 
ID5080899 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp2881108 
End bp2882958 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content47% 
IMG OID640499650 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001184002 
Protein GI146293578 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.87651e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTAAATA AATACCCAAT GTGGAAAAAC ATTATGGTGA TGCTTATCAT CGCCATAGGT 
TGTTTCTATG CCGTACCGAA CCTTTTTGGT GAAGATCACG CGGTGCAAGT GGTGGCGACT
CGTGGTGCAG AAGTAACTGC ATCTACCCAA GCCAGAGTGA ACGAGCTGTT AGCCGGTAAG
GGCATTGCGG TAAAGCGCTC TGAGCTTGAA AAAGGCCAGT TGTTGGTTCG TGTGCAGAAC
GCGGATCAAC AATTATTAGC AAAAGAAACG ATCGCAGAAG ATTTAGGTGA TAAGTTTAGT
GTTGCACTTA ACTTAGCTCC AGCAACACCG CAATGGCTCG AGTCTATGGG TGGTAGCCCT
ATGAAACTCG GTCTCGATCT TCGCGGCGGT GTGCACTTCT TAATGGAAGT GGACATGGGC
GAAGCGATCC GCAAGATGGA AGAGGCTAAG GTTGCTGACT TTCGTGCACA ATTACGTGAA
GAAACAATCC GTTATGCGGG CATTCGTGTT AATGCCTCTG GGATTGAGAT TAAATTCCGT
GATGCTGAAA GTTTAGCCAG TGCAGAACGT TTCCTTAAAT CTCGCAGTAA CGATATGGTC
TTCACCGATG TGAGCAAGGG TGATGATTTT GCCCTGCAAG CGGTGATGAG TGAAGCTTAT
CTTAAGCAGG TTAAAGAAGA AGCACTGCAA CAAAACATTA CCACTATTCG TAACCGTGTT
AATGAGTTAG GTGTTGCTGA ACCTGTAGTA CAGCGCCAAG GTGCAGAGCG TATTATCGTT
GAACTACCTG GTGTACAAGA TACGGCTCGC GCTAAAGAAA TTTTAGGGGC AACCGCATCG
ATTGAATTCC ATATGGTGGA TGACAAAGCC GATCCTAATG CCGCGCAATC AGGACGTATC
TCTGCAGGCT CTGAAGTGTA TCAACGTCGT GAAGGCGGCC AAGTCGTATT GAAAAAAGAA
GTGATGCTAA CGGGAGATCA TATCACCGGC GCCCAACCTA GCTTTGATCA ATACAGTCGC
CCACAGGTGA GCATTAATCT TGACGCTAAA GGCGGTACCA TTTTCTCTAA TGTGACGAAG
GACAACATAG GTAAACCTAT GGCGACCTTA TTCATTGAAT ATAAAGACAG TGGTGAACGT
AACGCCGATG GCAGCGTGAA AATGCAGAAA ATCCAAGAAG TGATTTCTGT GGCAACCATT
CAAGCCCGTT TAGGTCGTAA CTTTGTGATC ACAGGTTTAA GCCACGGTGA AGCACAAAAC
CTTGCTTTGC TGTTACGCGC TGGAGCTTTG ATTGCACCTG TATCCATTGT TGAAGAACGT
ACCATTGGTC CAAGTTTAGG CGCTGAAAAT ATTGAGAATG GTGTTCAAGC TATGGTGTGG
GGTATGGCCG TCGTCTTAAT CTTCATGCTG GTGTACTACC GCGGTTTTGG GCTTATCGCT
AACCTCGCGT TAACTGCAAA CTTAGTCATG GTTGTAGGCG TGATGTCGAT GATCCCAGGC
GCAGTATTGA CCCTTCCCGG TATTGCGGGG ATGGTGTTGA CAGTGGGGAT GGCAGTTGAT
GGTAACGTAC TCATTTATGA GCGTATTCGT GAAGAACTTC GTGCAGGACG TAGTGTACAG
CAGGCCATCC ATGAAGGTTA TGGTAATGCG TTTTCAACCA TTGCCGATGC GAACATCACG
ACTTTCCTTA CCGCATTAAT TTTATTTGCT GTGGGGACTG GTGCTGTTAA AGGCTTCGCG
GTGACCTTGA TGATAGGTAT TGCGACTTCC ATGTTTACCT CTATCGTGGG TACTCGCTCC
ATCGTTAATG CGATTTGGGG TGGTAAGCGC GTGAAGACAC TGTCTATCTA A
 
Protein sequence
MLNKYPMWKN IMVMLIIAIG CFYAVPNLFG EDHAVQVVAT RGAEVTASTQ ARVNELLAGK 
GIAVKRSELE KGQLLVRVQN ADQQLLAKET IAEDLGDKFS VALNLAPATP QWLESMGGSP
MKLGLDLRGG VHFLMEVDMG EAIRKMEEAK VADFRAQLRE ETIRYAGIRV NASGIEIKFR
DAESLASAER FLKSRSNDMV FTDVSKGDDF ALQAVMSEAY LKQVKEEALQ QNITTIRNRV
NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMVDDKA DPNAAQSGRI
SAGSEVYQRR EGGQVVLKKE VMLTGDHITG AQPSFDQYSR PQVSINLDAK GGTIFSNVTK
DNIGKPMATL FIEYKDSGER NADGSVKMQK IQEVISVATI QARLGRNFVI TGLSHGEAQN
LALLLRAGAL IAPVSIVEER TIGPSLGAEN IENGVQAMVW GMAVVLIFML VYYRGFGLIA
NLALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ
QAIHEGYGNA FSTIADANIT TFLTALILFA VGTGAVKGFA VTLMIGIATS MFTSIVGTRS
IVNAIWGGKR VKTLSI