| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2481 |
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| Symbol | secF |
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| ID | 5080898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 2880148 |
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| End bp | 2881095 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640499649 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_001184001 |
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| Protein GI | 146293577 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0456849 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAGAAA TTTTATCCTT AAAACGTACA GTAAACTTTC TCCGCCATGC GCTGCCGATT
AGTATCTTAT CCGCGGTTCT TGTGCTTGGC TCATTAGTGT CGCTTGCGAT CAACGGTATT
AACTGGGGTC TTGATTTCAC TGGCGGTACT GTTGTTGAAA TGGAGTTTAC TCAGCCTGTT
GACTTGAATA CGCTGCGTGT GCAACTGACG ACACCTGATA CCGAAGGCGC GATAGTACAA
AATTTCGGTT CAAGCCGCGA TGTATTAGTA CGCTTATCTG TAAAAGAAGG CGTTAAGAGC
GATGTGCAGG TTAAATCTGT TATGGACGCC GCACAGAAAG TTGATCCTCA AGTTCAGCAA
AAGCGTGTTG AGTTTGTTGG CCCACAAGTG GGTAAAGAAC TGGCTGAGCA AGGCGGATTG
GCAGTATTAG TAGCGCTGAT CTGTATTATG ATCTACGTGT CTTTCCGCTT CGAATGGCGC
TTAGCATTTG GTTCTGTTGC GGCACTCGCC CACGACGTTA TCGTAACCTT AGGGGTATTT
TCGTTATTCC AATTGGAATT CGATTTGACC GTATTGGCAG GTTTATTGAC AGTGGTAGGT
TACTCGCTTA ACGATACTAT CGTGGTATTT GACCGGATCC GTGAAAACTT CCTCAAGCTG
CGTAAGAGTG AACCAGAAGA TATCGTTAAC ATCTCTATCA CTCAAACCAT GAGTCGAACG
ATTATTACCA CGGGGACGAC CTTAGTGGTT GTCGTGGCAC TGTTTCTTAA AGGTGGCACT
ATGATCCATG GGTTTGCGAC TGCATTGTTA ATGGGTATTT TTGTAGGTAC CTATTCTTCT
ATTTATGTGG CGAGTTTCTT GGCCATTAAA TTGGGGATTA GCCGCGAGCA TATGATGCCC
GTTGAGATCG AGAAAGAAGG CGCCGATCAG CCGTCTATGA TGCCTTAA
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| Protein sequence | MLEILSLKRT VNFLRHALPI SILSAVLVLG SLVSLAINGI NWGLDFTGGT VVEMEFTQPV
DLNTLRVQLT TPDTEGAIVQ NFGSSRDVLV RLSVKEGVKS DVQVKSVMDA AQKVDPQVQQ
KRVEFVGPQV GKELAEQGGL AVLVALICIM IYVSFRFEWR LAFGSVAALA HDVIVTLGVF
SLFQLEFDLT VLAGLLTVVG YSLNDTIVVF DRIRENFLKL RKSEPEDIVN ISITQTMSRT
IITTGTTLVV VVALFLKGGT MIHGFATALL MGIFVGTYSS IYVASFLAIK LGISREHMMP
VEIEKEGADQ PSMMP
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