| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2364 |
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| Symbol | |
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| ID | 5080392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 2729465 |
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| End bp | 2731522 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640499532 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001183884 |
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| Protein GI | 146293460 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0084265 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGACA TTCAACTCGA TAAACTCCTT TCTGCCGATA TGTCACCTGA GAATGCACAG
CAGGTGATGC AGGCCCTTAG CCAATCGCTG AACGAACACA ATATTCGTTA CTATGTGGAT
GATGCGCCAA CTATTACTGA TTCTGAGTAT GATAGGTTGA TGCAATGCTT GATAAAGCTC
GAAGCGCAGT TCCCTCAGTT TATCGTTGCC GACTCGCCAA CCCAGCGAGT CGGCGGGCTG
GCGCTGGCCA AGTTTGATCA AATCACTCAC CTTAAGCCTA TGTTGAGCTT AGATAACGCT
TTCGGTGAAG CGGACTTCAG CGCTTTTCAT AAGCGCGTTA CCGATAAAGT CGGTGAGGTG
AGTTTTTGTT GTGAACCTAA ACTCGATGGT TTAGCTGTTA GTATTTTGTA TCGCCATGGT
GTACTCGAGC GCGCAGCGAC CCGTGGCGAT GGAACAGTAG GTGAAGACAT CACTGAAAAT
GTGAAGACCA TTAAATCCAT TCCACTTAAA TTGCGTGGCA ATGATTTTCC TGAAGTGGTT
GAAGTTCGCG GTGAAGCTTT TATGCCCAAG GCTGCTTTTG AGGCTCTCAA TGAGCGTGCG
CGCGCAAAGG ATGAAAAGCT GTTTGTCAAT CCACGTAACG CGGCGGCGGG GAGTTTACGT
CAACTCGACA GTAAAATTAC GGCCTCTCGC TCACTTGCTT TTTATGCTTA TGCATTGGGT
GTGGTTGAGC CCGATTCTTA TTCGTTGGGC AAAACCCACT ATGAACAGTT ACAGCAGCTA
AAATCTTGGG GTTTACCCGT TAGCAACGAA ATCAAAGTGT GCGATGAGTT AGATCAAGTA
TTCGACTACT ACAAAGATAT TCTTACCCGC CGCAGCGATT TACCCTTTGA AATCGATGGT
GTGGTGATGA AAGTTAACGA TATTGCCCAA CAGCAACGCT TAGGTTTTGT GGCTAAATCC
CCCCGTTGGG CCATTGCCTA TAAGTTTCCC GCTCAAGAGG AAATGACATT ACTTGAAGGT
GTCGATTTTC AAGTAGGGCG TACCGGTGCC GTCACCCCTG TTGCACGCTT AAAACCAGTA
TTTGTAGGCG GGGTAACTGT TTCTAATGCC ACACTACACA ATGCCGATGA GATTGAGCGT
TTAGGCATTA AAATCGGTGA TACTGTGATT ATTCGCCGTG CTGGCGATGT TATCCCACAA
ATTGTGGCGA TAGTGCCCGA AAGACGTCCT GAAACGGCGA CTAATATCGT CTTTCCGCAC
AACTGTCCTG TTTGCGGCAG TTTAGTCGAG CGTCTTGAAG GAGAGGCGGT GGCTCGCTGC
AGCGGCGGTT TGTTTTGTGA GGCGCAGCGT AAAGAAGCGA TTAAGCATTT CGCATCCCGC
AAGGCGTTAG ATATCGATGG TATGGGCGAC AAAGTCGTCG AGCAATTGAT TGATAAAGAA
CTCGTCCAAA GTCCTGCAGA TTTGTTTAAG CTTACCGCTT CAATGATGAC TATGCTCGAT
CGCATGGGCA TGAAGTCGGC AACCAATTTA GCGGCAGCGA TTGAAGCGGC CAAAACCACA
ACACTTGCAC GTTTCTTATA TGCCTTAGGC ATTCGTGAAG TGGGCGAGGC GACGGCGGCA
AACCTTGCGG CGCACTTTGC CAGTTTAGAT GCGCTGCGCG TTGCGACTGT TGAGCAGTTA
ACTGCAGTGG AAGATGTGGG CGTTGTTGTT GCTCAGCATG TAGCACATTT TTTTGCTCAG
CCCCATAATC TTGAAGTGAT TGATGCCTTG ATTGCAGCAG GAGTCCACTG GCCTGCTATT
GAAGCGCCGA GCGCGGATGC ACAACCCCTT AAAGGTCAGA CTTGGGTATT AACGGGCACC
TTAAACCAAC TTAATCGTAA CGATGCTAAG GCGCAGTTGC AGACCCTTGG GGCGAAAGTG
GCTGGCAGTG TTTCCAAAAA TACCGATTGT TTAGTGGCAG GTGAGGCGGC AGGTTCAAAA
CTGGCTAAAG CGCAGGAACT AGGGGTAAAG GTGATTGATG AAGAGGCGCT ATTAGCACTC
TTCGCGGCTA ATCGCTAG
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| Protein sequence | MQDIQLDKLL SADMSPENAQ QVMQALSQSL NEHNIRYYVD DAPTITDSEY DRLMQCLIKL
EAQFPQFIVA DSPTQRVGGL ALAKFDQITH LKPMLSLDNA FGEADFSAFH KRVTDKVGEV
SFCCEPKLDG LAVSILYRHG VLERAATRGD GTVGEDITEN VKTIKSIPLK LRGNDFPEVV
EVRGEAFMPK AAFEALNERA RAKDEKLFVN PRNAAAGSLR QLDSKITASR SLAFYAYALG
VVEPDSYSLG KTHYEQLQQL KSWGLPVSNE IKVCDELDQV FDYYKDILTR RSDLPFEIDG
VVMKVNDIAQ QQRLGFVAKS PRWAIAYKFP AQEEMTLLEG VDFQVGRTGA VTPVARLKPV
FVGGVTVSNA TLHNADEIER LGIKIGDTVI IRRAGDVIPQ IVAIVPERRP ETATNIVFPH
NCPVCGSLVE RLEGEAVARC SGGLFCEAQR KEAIKHFASR KALDIDGMGD KVVEQLIDKE
LVQSPADLFK LTASMMTMLD RMGMKSATNL AAAIEAAKTT TLARFLYALG IREVGEATAA
NLAAHFASLD ALRVATVEQL TAVEDVGVVV AQHVAHFFAQ PHNLEVIDAL IAAGVHWPAI
EAPSADAQPL KGQTWVLTGT LNQLNRNDAK AQLQTLGAKV AGSVSKNTDC LVAGEAAGSK
LAKAQELGVK VIDEEALLAL FAANR
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