| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2348 |
|---|
| Symbol | |
|---|
| ID | 5080371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 2703205 |
|---|
| End bp | 2706642 |
|---|
| Gene Length | 3438 bp |
|---|
| Protein Length | 1145 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640499511 |
|---|
| Product | integral membrane sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001183868 |
|---|
| Protein GI | 146293444 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTAA CCTTAGTCGT TTCCGTCATT GCTGTTTGTT ATGTATCACT TTTATTCCTG
TTGGCTTGGG GAGCCGAGCG TTGGTTTGGT GGGGTGACAA AAAAGTTACA GGTTGTGATT
TATGGCCTTA GTCTTGCCGT TTATTGCTCC TCATGGAGTT TTTTGGGGAC TGTAGGGCAA
TCAGCTAAGG ATCTTTGGTC TTTTTTACCC ATTTTTATCG GCCCGATCCT GATCTTTACT
CTGGGGTTTG GCATGTTGCG CAAAATGGTA CTTGTGTCTA AAGCACAAAA TATTACCTCT
GTTGCTGACT TTATTGCCGC ACGTTATGGA AAATCCCAAA CCCTTGCCGC TCTCGTCACT
TTGATTGCGT TGTTTGGCAT CATGCCTTAC ATCGCTTTAC AACTTAAGGC GATGGTGTTT
AGCCTGAATT TATTTCAACC CGCAGACGAT CCCCTTGATG GGGTCACCAT TTCGTTATTG
ATCACCGCAT TACTCGCCAT TTTTGCCATT TTATTTGGTA CCCGAAAACT AGATGCAACT
GAGCATAATC CCGGCATGAT GCTCGCGATT GCCTTTGAGT CTTTGGTTAA ACTTGCGGCT
TTTCTGTTAG TTGGGATTGT CATTAGCTTT GGGGTATTTG ATGGTTTTGG TGATATCTGG
CAGCAGGCAA GTGCCAAATC ATTGATCAAT AATCCCAATC CGCGAATTGA AGCCTTAATG
CCTGAGCTAT TAGTGGGCAT GGCAGCCTTC CTGTGTATGC CAAGGCAGTT CCATGTCATG
GTTGTTGAAT GTGCTGATGA GTCCGTCTTA TCAAAAGGGC GGTGGTTATT TCCTTTGTAT
TTAGCATTAT TTGGCTTATT TGTTGGACCA CTCGCCCTTG CTGGTCAATT GATCTTGGGG
GATTCAGTTG CCGCCGATAC TTATGTGATC AATTTGCCAC TCGCATTAGA TCAACCTCTG
CTGGCCGTTA TCGCTTTGCT AGGGACTTTA TCTGCGGCGA CGGGAATGGT CATTGTGGCC
GTTGTGACCA TCAGTGTTAT GGTCAGTAAT GAATGGTTAG TGCCGGTAAT GTTACGCGCT
GGGCATATTC GCGAGAAAAA TTTTAGCCAA TTCTCCCAAA TGCTCCTTAA TGTTCGCCGG
TTAGCTATCG TCATTATCCT TGGTTTGGGC TACTGCAGTT ACCTCGCTCT AGCGGACAGT
GACTCTTTAT CTCACTTAGG TATGTTGTCC TTTGGAGCTT TTGCCCAGCT AGCCCCTGCA
CTTGTGGGCG GGCTTTATTG GAAGCATGGT AACCGTGCAG GTGTGTTTTT AGGATTAGGC
GTAGGTTTTG TCCTATGGTT TTATCTTATG CTTCAAGGTA TGGCGGATAC TCAAAGCTCT
GGCGCACCGA TTTCAACCCA TTTTGAACTA ACCAGTGCGA TTCAGCCTAA TGTGCGTGAT
GCCTTAACGG CATTATTTGT CAATATTGCG TGTTATATAC TGGGTTCTAT TTGGTTTAGG
GCAGGGGTGG CTGAGCGTAT TCAGGCCAGT GCTTTTGTGA GCCCCGGTAA ACTCAAAAAT
AATGCTAATA AAAAGAATGG GCCAATTTCA CAACAGGATT TATTAATCCT TGCGAGTCGC
TTTGTCAGCC CAACCCGTGC CTATGAGAGT TTTAGCCGTT TCTCAACTGA TGCGGTTAAA
AGTGATAGTT GGCATAAAGC GGCTCCTCCT GCGCTGATTT CTCATACTGA GCGTTTACTT
GCCAGCGTCC TTGGTGCCTC AAGTGCGTCT TTGGTAATGG ATTCTGTGCT GCAAGGGCGC
GATCTTGCTT TGGATGAAGT ATTTAGCCTT GTCGATGAAG CATCATCAAA AATCATGCTT
AGCCAAGATA TGCTACGCGG CGCGATTGAG CATGCCTATG AGGGGATGAG TGTTATTGAT
AGCGATCTGA ACCTCGTGGC GTGGAATTAT AAATATGTAG AGCTTTATCA ATATCCAGAA
GGTTTTTTGC AGCAGGGAAT GCCTATCAGC GAAGTGATCC GCTTTAACGC TGCGCGGGGG
TATTGCGGGC AAGGGGATAT CGAATTACAG GTTGAAAAGC GGGTACAGCA TATGCGTAAT
GGTACGCCGC ATACTTCAGA GCGATATCGT AAAGACGGGA AAGTTATTAA AATTCAAGGG
AACCCTATGC CAGATGGTGG GTTTGTTATG ACTTTTACCG ATATTACCCA ATACCGTGAG
CAGGAACGTG CTTTACTCGA AGCCAATGAA ACCCTTGAAA GCAGAGTTAA GGAACGTACC
TTTGAACTTG CGATGTTAAA TAGCGAACTG TTAGAGGCTA AAGCCCAAGA GGAAATGGCG
AATGCGTCTA AGAGTCGTTT TCTTGCCGCG GTAGGCCACG ATTTGATGCA ACCCTTAAAT
GCGGCGCGGT TATTTACCGC ATCGCTATCC CAATATCCCA ACTTAGACCG AGAGGCGCGC
ACGACCTTAT CCCATGTGAA TAGTTCGCTG AAAATTGCGG GTGAACTCCT AACCGATTTA
CTCGACATCT CTAAGCTGGA TTCGGGGATG GTGGAGGTAA ATCGGCGTGA TTTTGCAATA
TCAGAGCTGC TTAATGGATT ATCCGTCGAA TTTGAAGCGA TGGCGGGGGA TAGTCAAATT
CGCTTTAAGA TGATGCCTTG CAGCGCCACA GTAAACTCCG ATCCGTCACT CCTTAGGCGA
GTGCTGCAAA ACTTTTTAAC CAATGCCTAT CGCTATGCCC GTGGTGGGCG GGTACTTTTT
GGTTGTCGTC ATCGGGGGCG CGAACTTGAA ATTCAAGTAT TAGATACGGG TTGTGGCATT
GATGAACGTG AAACCCAAGA GATTTTTAAG GAGTTTAAAC GATTAAATAA TCCTAAAAGT
AATAGTGTGA GTGGTTTGGG TTTAGGATTA GCGATAGCAG ATAGGATCAG TAAGGTGCTA
GAGCACAGTA TTTATGTGTC ATCACAACTC GGCCGTGGCT CAGTGTTTTC GATTCGCGTC
CCTTTAGGTG AAACCGTGCG CCAACCACAG ATCAAAGCGT TACCCTCATT ATTACAGCCC
TTATCCGGCA TTAAGGTGTT GTGCATCGAT AATGAGGAGG CGATTTTGGC GGGATTAGAA
AGTTTATTAA GTCGTTGGCA GTGCGAAGTT ATCTGTGCCA AGAATTTATC AGAAGCCCGA
ATTAAGCTGG GTTTGAAAGG CGTAGCACCA GATATCGTCT TAGCGGATTT TCATTTGGAT
GATGGACAAA ATGGGGTCGA TGCGATGGAC GGTATTCGTG CCTTGTATGG GCAAGATTTA
CCCGGTATTT TGATCACTGC GAATACCCGT AAAGAATTGG TTGAGGATGT GCAGCGCCGT
GGTTATCACT ATATGGCGAA AATGATTAAG CCAGCAGCAC TGCGAGCCTT GATTTCAAGC
CTCGTAAAAT CAGTCTGA
|
|---|
| Protein sequence | MNLTLVVSVI AVCYVSLLFL LAWGAERWFG GVTKKLQVVI YGLSLAVYCS SWSFLGTVGQ
SAKDLWSFLP IFIGPILIFT LGFGMLRKMV LVSKAQNITS VADFIAARYG KSQTLAALVT
LIALFGIMPY IALQLKAMVF SLNLFQPADD PLDGVTISLL ITALLAIFAI LFGTRKLDAT
EHNPGMMLAI AFESLVKLAA FLLVGIVISF GVFDGFGDIW QQASAKSLIN NPNPRIEALM
PELLVGMAAF LCMPRQFHVM VVECADESVL SKGRWLFPLY LALFGLFVGP LALAGQLILG
DSVAADTYVI NLPLALDQPL LAVIALLGTL SAATGMVIVA VVTISVMVSN EWLVPVMLRA
GHIREKNFSQ FSQMLLNVRR LAIVIILGLG YCSYLALADS DSLSHLGMLS FGAFAQLAPA
LVGGLYWKHG NRAGVFLGLG VGFVLWFYLM LQGMADTQSS GAPISTHFEL TSAIQPNVRD
ALTALFVNIA CYILGSIWFR AGVAERIQAS AFVSPGKLKN NANKKNGPIS QQDLLILASR
FVSPTRAYES FSRFSTDAVK SDSWHKAAPP ALISHTERLL ASVLGASSAS LVMDSVLQGR
DLALDEVFSL VDEASSKIML SQDMLRGAIE HAYEGMSVID SDLNLVAWNY KYVELYQYPE
GFLQQGMPIS EVIRFNAARG YCGQGDIELQ VEKRVQHMRN GTPHTSERYR KDGKVIKIQG
NPMPDGGFVM TFTDITQYRE QERALLEANE TLESRVKERT FELAMLNSEL LEAKAQEEMA
NASKSRFLAA VGHDLMQPLN AARLFTASLS QYPNLDREAR TTLSHVNSSL KIAGELLTDL
LDISKLDSGM VEVNRRDFAI SELLNGLSVE FEAMAGDSQI RFKMMPCSAT VNSDPSLLRR
VLQNFLTNAY RYARGGRVLF GCRHRGRELE IQVLDTGCGI DERETQEIFK EFKRLNNPKS
NSVSGLGLGL AIADRISKVL EHSIYVSSQL GRGSVFSIRV PLGETVRQPQ IKALPSLLQP
LSGIKVLCID NEEAILAGLE SLLSRWQCEV ICAKNLSEAR IKLGLKGVAP DIVLADFHLD
DGQNGVDAMD GIRALYGQDL PGILITANTR KELVEDVQRR GYHYMAKMIK PAALRALISS
LVKSV
|
|---|
| |